Literature DB >> 26701014

Coarse-grained molecular simulations of the melting kinetics of small unilamellar vesicles.

Lara A Patel1, James T Kindt.   

Abstract

Simulations of small unilamellar lipid bilayer vesicles have been performed to model their response to an instantaneous rise in temperature, starting from an initial low-temperature structure, to temperatures near or above the main chain transition temperature. The MARTINI coarse-grained force-field was used to construct slabs of gel-phase DPPC bilayers, which were assembled into truncated icosahedral structures containing 13,165 or 31,021 lipids. Equilibration at 280 K produced structures with several (5-8) domains, characterized by facets of lipids packed in the gel phase connected by disordered ridges. Instantaneous heating to final temperatures ranging from 290 K to 310 K led to partial or total melting over 500 ns trajectories, accompanied by changes in vesicle shape and the sizes and arrangements of remaining gel-phase domains. At temperatures that produced partial melting, the gel-phase lipid content of the vesicles followed an exponential decay, similar in form and timescale to the sub-microsecond phase of melting kinetics observed in recent ultrafast IR temperature-jump experiments. The changing rate of melting appears to be the outcome of a number of competing contributions, but changes in curvature stress arising from the expansion of the bilayer area upon melting are a major factor. The simulations give a more detailed picture of the changes that occur in frozen vesicles following a temperature jump, which will be of use for the interpretation of temperature-jump experiments on vesicles.

Entities:  

Year:  2015        PMID: 26701014     DOI: 10.1039/c5sm02560e

Source DB:  PubMed          Journal:  Soft Matter        ISSN: 1744-683X            Impact factor:   3.679


  2 in total

1.  Time-resolved measurements of an ion channel conformational change driven by a membrane phase transition.

Authors:  Paul Stevenson; Andrei Tokmakoff
Journal:  Proc Natl Acad Sci U S A       Date:  2017-09-25       Impact factor: 11.205

2.  Binding, folding and insertion of a β-hairpin peptide at a lipid bilayer surface: Influence of electrostatics and lipid tail packing.

Authors:  Keon A Reid; Caitlin M Davis; R Brian Dyer; James T Kindt
Journal:  Biochim Biophys Acta Biomembr       Date:  2017-12-30       Impact factor: 3.747

  2 in total

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