Literature DB >> 26691832

Systems genetics identifies a convergent gene network for cognition and neurodevelopmental disease.

Michael R Johnson1, Kirill Shkura1,2, Sarah R Langley1,3, Andree Delahaye-Duriez1,2,4, Prashant Srivastava1, W David Hill5,6, Owen J L Rackham3, Gail Davies5,6, Sarah E Harris5,7, Aida Moreno-Moral2, Maxime Rotival2, Doug Speed8, Slavé Petrovski9, Anaïs Katz1,2, Caroline Hayward10,11, David J Porteous5,7,11, Blair H Smith12, Sandosh Padmanabhan13, Lynne J Hocking14, John M Starr5,15, David C Liewald5, Alessia Visconti16, Mario Falchi16, Leonardo Bottolo17,18, Tiziana Rossetti2, Bénédicte Danis19, Manuela Mazzuferi19, Patrik Foerch19, Alexander Grote20, Christoph Helmstaedter21, Albert J Becker22, Rafal M Kaminski19, Ian J Deary5,6, Enrico Petretto2,3.   

Abstract

Genetic determinants of cognition are poorly characterized, and their relationship to genes that confer risk for neurodevelopmental disease is unclear. Here we performed a systems-level analysis of genome-wide gene expression data to infer gene-regulatory networks conserved across species and brain regions. Two of these networks, M1 and M3, showed replicable enrichment for common genetic variants underlying healthy human cognitive abilities, including memory. Using exome sequence data from 6,871 trios, we found that M3 genes were also enriched for mutations ascertained from patients with neurodevelopmental disease generally, and intellectual disability and epileptic encephalopathy in particular. M3 consists of 150 genes whose expression is tightly developmentally regulated, but which are collectively poorly annotated for known functional pathways. These results illustrate how systems-level analyses can reveal previously unappreciated relationships between neurodevelopmental disease-associated genes in the developed human brain, and provide empirical support for a convergent gene-regulatory network influencing cognition and neurodevelopmental disease.

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Mesh:

Year:  2015        PMID: 26691832     DOI: 10.1038/nn.4205

Source DB:  PubMed          Journal:  Nat Neurosci        ISSN: 1097-6256            Impact factor:   24.884


  38 in total

1.  Transcriptomic context of DRD1 is associated with prefrontal activity and behavior during working memory.

Authors:  Leonardo Fazio; Giulio Pergola; Marco Papalino; Pasquale Di Carlo; Anna Monda; Barbara Gelao; Nicola Amoroso; Sabina Tangaro; Antonio Rampino; Teresa Popolizio; Alessandro Bertolino; Giuseppe Blasi
Journal:  Proc Natl Acad Sci U S A       Date:  2018-05-07       Impact factor: 11.205

Review 2.  WONOEP appraisal: Network concept from an imaging perspective.

Authors:  Robert C Wykes; Hui Ming Khoo; Lorenzo Caciagli; Hal Blumenfeld; Peyman Golshani; Jaideep Kapur; John M Stern; Andrea Bernasconi; Stefanie Dedeurwaerdere; Neda Bernasconi
Journal:  Epilepsia       Date:  2019-06-09       Impact factor: 5.864

Review 3.  The nephrologist of tomorrow: towards a kidney-omic future.

Authors:  Mina H Hanna; Alessandra Dalla Gassa; Gert Mayer; Gianluigi Zaza; Patrick D Brophy; Loreto Gesualdo; Francesco Pesce
Journal:  Pediatr Nephrol       Date:  2016-03-09       Impact factor: 3.714

4.  Histone demethylase KDM5C is a SAHA-sensitive central hub at the crossroads of transcriptional axes involved in multiple neurodevelopmental disorders.

Authors:  Loredana Poeta; Agnese Padula; Benedetta Attianese; Mariaelena Valentino; Lucia Verrillo; Stefania Filosa; Cheryl Shoubridge; Adriano Barra; Charles E Schwartz; Jesper Christensen; Hans van Bokhoven; Kristian Helin; Maria Brigida Lioi; Patrick Collombat; Jozef Gecz; Lucia Altucci; Elia Di Schiavi; Maria Giuseppina Miano
Journal:  Hum Mol Genet       Date:  2019-12-15       Impact factor: 6.150

5.  Transcriptome analysis of rat dorsal hippocampal CA1 after an early life seizure induced by kainic acid.

Authors:  Heather O'Leary; Lauren Vanderlinden; Lara Southard; Anna Castano; Laura M Saba; Tim A Benke
Journal:  Epilepsy Res       Date:  2020-01-30       Impact factor: 3.045

6.  Systems genetics identifies Hp1bp3 as a novel modulator of cognitive aging.

Authors:  Sarah M Neuner; Benjamin P Garfinkel; Lynda A Wilmott; Bogna M Ignatowska-Jankowska; Ami Citri; Joseph Orly; Lu Lu; Rupert W Overall; Megan K Mulligan; Gerd Kempermann; Robert W Williams; Kristen M S O'Connell; Catherine C Kaczorowski
Journal:  Neurobiol Aging       Date:  2016-06-17       Impact factor: 4.673

7.  A Transcriptome-Based Drug Discovery Paradigm for Neurodevelopmental Disorders.

Authors:  Ryan S Dhindsa; Anthony W Zoghbi; Daniel K Krizay; Chirag Vasavda; David B Goldstein
Journal:  Ann Neurol       Date:  2020-11-18       Impact factor: 10.422

8.  Clinical Presentation of a Complex Neurodevelopmental Disorder Caused by Mutations in ADNP.

Authors:  Anke Van Dijck; Anneke T Vulto-van Silfhout; Elisa Cappuyns; Ilse M van der Werf; Grazia M Mancini; Andreas Tzschach; Raphael Bernier; Illana Gozes; Evan E Eichler; Corrado Romano; Anna Lindstrand; Ann Nordgren; Malin Kvarnung; Tjitske Kleefstra; Bert B A de Vries; Sébastien Küry; Jill A Rosenfeld; Marije E Meuwissen; Geert Vandeweyer; R Frank Kooy
Journal:  Biol Psychiatry       Date:  2018-03-15       Impact factor: 13.382

9.  Genetic Liability for Internalizing Versus Externalizing Behavior Manifests in the Developing and Adult Hippocampus: Insight From a Meta-analysis of Transcriptional Profiling Studies in a Selectively Bred Rat Model.

Authors:  Isabelle A Birt; Megan H Hagenauer; Sarah M Clinton; Cigdem Aydin; Peter Blandino; John D H Stead; Kathryn L Hilde; Fan Meng; Robert C Thompson; Huzefa Khalil; Alex Stefanov; Pamela Maras; Zhifeng Zhou; Elaine K Hebda-Bauer; David Goldman; Stanley J Watson; Huda Akil
Journal:  Biol Psychiatry       Date:  2020-05-27       Impact factor: 13.382

Review 10.  Commonalities in epileptogenic processes from different acute brain insults: Do they translate?

Authors:  Pavel Klein; Raymond Dingledine; Eleonora Aronica; Christophe Bernard; Ingmar Blümcke; Detlev Boison; Martin J Brodie; Amy R Brooks-Kayal; Jerome Engel; Patrick A Forcelli; Lawrence J Hirsch; Rafal M Kaminski; Henrik Klitgaard; Katja Kobow; Daniel H Lowenstein; Phillip L Pearl; Asla Pitkänen; Noora Puhakka; Michael A Rogawski; Dieter Schmidt; Matti Sillanpää; Robert S Sloviter; Christian Steinhäuser; Annamaria Vezzani; Matthew C Walker; Wolfgang Löscher
Journal:  Epilepsia       Date:  2017-12-15       Impact factor: 5.864

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