Literature DB >> 26689483

Complete genome sequence of Celeribacter marinus IMCC12053(T), the host strain of marine bacteriophage P12053L.

Jhung-Ahn Yang1, Ilnam Kang2, Mikyung Moon1, Uh-Chan Ryu3, Kae Kyoung Kwon4, Jang-Cheon Cho2, Hyun-Myung Oh5.   

Abstract

Isolated from coastal seawater from Yellow Sea of Korea, Celeribacter marinus IMCC12053 was used as the host bacterium for bacteriophage P12053L. Here we report the complete genome sequence of strain IMCC12053 for further study of the marine bacteriophage P12053L functional genes. Single molecule real-time technology (PacBio RSII) was used for the single circular chromosome that is 3,096,705 base pairs in length and the GC content is 56.24%. It contains 3155 ORFs with 45 tRNAs and 6 rRNAs genes. N(6)-methyladenosine patterns were also investigated for 32 unmethylated genes and intergenic regions that covered many regulators and phage genes as well as ribosomal RNA genes and tRNA genes. Cryptic N(4)-methylcytosine pattern was investigated to speculate GpC methylase activity throughout the genome. Comparative genomics with other Celeribacter genomes were carried out for polyaromatic hydrocarbon degradation, but there were no aromatic ring oxygenases in IMCC12053 when compared to Celeribacter indicus P73.
Copyright © 2015 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Celeribacter marinus; Marine bacteriophage; P12053L; SMRT (single molecule real-time sequencing)

Mesh:

Substances:

Year:  2015        PMID: 26689483     DOI: 10.1016/j.margen.2015.11.012

Source DB:  PubMed          Journal:  Mar Genomics        ISSN: 1874-7787            Impact factor:   1.710


  4 in total

1.  Comparative genome analysis of the Flavobacteriales bacterium strain UJ101, isolated from the gut of Atergatis reticulatus.

Authors:  Jhung-Ahn Yang; Sung-Hyun Yang; Junghee Kim; Kae Kyoung Kwon; Hyun-Myung Oh
Journal:  J Microbiol       Date:  2017-06-30       Impact factor: 3.422

2.  Complete Genome Sequence of Flavobacteriales Bacterium Strain UJ101 Isolated from a Xanthid Crab.

Authors:  Jhung-Ahn Yang; Kae Kyoung Kwon; Hyun-Myung Oh
Journal:  Genome Announc       Date:  2017-02-02

3.  Genome Sequence of Deinococcus marmoris PAMC 26562 Isolated from Antarctic Lichen.

Authors:  Junghee Kim; Kae Kyoung Kwon; Byung Kwon Kim; Soon Gyu Hong; Hyun-Myung Oh
Journal:  Genome Announc       Date:  2017-03-23

4.  Genome Analysis of Celeribacter sp. PS-C1 Isolated from Sekinchan Beach in Selangor, Malaysia, Reveals Its β-Glucosidase and Licheninase Activities.

Authors:  Nurfatini Radzlin; Amira Suriaty Yaakop; Kian Mau Goh; Kok Jun Liew; Iffah Izzati Zakaria; Ummirul Mukminin Kahar
Journal:  Microorganisms       Date:  2022-02-10
  4 in total

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