Literature DB >> 26682627

How quantum entanglement in DNA synchronizes double-strand breakage by type II restriction endonucleases.

P Kurian1, G Dunston2, J Lindesay3.   

Abstract

Macroscopic quantum effects in living systems have been studied widely in pursuit of fundamental explanations for biological energy transport and sensing. While it is known that type II endonucleases, the largest class of restriction enzymes, induce DNA double-strand breaks by attacking phosphodiester bonds, the mechanism by which simultaneous cutting is coordinated between the catalytic centers remains unclear. We propose a quantum mechanical model for collective electronic behavior in the DNA helix, where dipole-dipole oscillations are quantized through boundary conditions imposed by the enzyme. Zero-point modes of coherent oscillations would provide the energy required for double-strand breakage. Such quanta may be preserved in the presence of thermal noise by the enzyme's displacement of water surrounding the DNA recognition sequence. The enzyme thus serves as a decoherence shield. Palindromic mirror symmetry of the enzyme-DNA complex should conserve parity, because symmetric bond-breaking ceases when the symmetry of the complex is violated or when physiological parameters are perturbed from optima. Persistent correlations in DNA across longer spatial separations-a possible signature of quantum entanglement-may be explained by such a mechanism.
Copyright © 2015 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Coherent energy transport; Dipole–dipole oscillations; Pi–pi stacking interactions; Quantum biology; Quantum genomics

Mesh:

Substances:

Year:  2015        PMID: 26682627      PMCID: PMC4746125          DOI: 10.1016/j.jtbi.2015.11.018

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  37 in total

1.  Specificity changes in the evolution of type II restriction endonucleases: a biochemical and bioinformatic analysis of restriction enzymes that recognize unrelated sequences.

Authors:  Vera Pingoud; Anna Sudina; Hildegard Geyer; Janusz M Bujnicki; Rudi Lurz; Gerhild Lüder; Richard Morgan; Elena Kubareva; Alfred Pingoud
Journal:  J Biol Chem       Date:  2004-11-24       Impact factor: 5.157

Review 2.  Type II restriction endonucleases: structure and mechanism.

Authors:  A Pingoud; M Fuxreiter; V Pingoud; W Wende
Journal:  Cell Mol Life Sci       Date:  2005-03       Impact factor: 9.261

3.  Acoustic spectroscopy of DNA in the gigahertz range.

Authors:  V N Blinov; V L Golo
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2011-02-10

4.  Introduction of asymmetry in the naturally symmetric restriction endonuclease EcoRV to investigate intersubunit communication in the homodimeric protein.

Authors:  F Stahl; W Wende; A Jeltsch; A Pingoud
Journal:  Proc Natl Acad Sci U S A       Date:  1996-06-11       Impact factor: 11.205

5.  Differences in water release for the binding of EcoRI to specific and nonspecific DNA sequences.

Authors:  N Y Sidorova; D C Rau
Journal:  Proc Natl Acad Sci U S A       Date:  1996-10-29       Impact factor: 11.205

6.  Intra- vs intersubunit communication in the homodimeric restriction enzyme EcoRV: Thr 37 and Lys 38 involved in indirect readout are only important for the catalytic activity of their own subunit.

Authors:  F Stahl; W Wende; C Wenz; A Jeltsch; A Pingoud
Journal:  Biochemistry       Date:  1998-04-21       Impact factor: 3.162

7.  Microwave-field-driven acoustic modes in DNA.

Authors:  G S Edwards; C C Davis; J D Saffer; M L Swicord
Journal:  Biophys J       Date:  1985-06       Impact factor: 4.033

8.  A perfectly symmetric lac operator binds the lac repressor very tightly.

Authors:  J R Sadler; H Sasmor; J L Betz
Journal:  Proc Natl Acad Sci U S A       Date:  1983-11       Impact factor: 11.205

9.  Metal ion-mediated substrate-assisted catalysis in type II restriction endonucleases.

Authors:  N C Horton; K J Newberry; J J Perona
Journal:  Proc Natl Acad Sci U S A       Date:  1998-11-10       Impact factor: 11.205

10.  Evidence for active maintenance of inverted repeat structures identified by a comparative genomic approach.

Authors:  Guoyan Zhao; Kuan Y Chang; Katherine Varley; Gary D Stormo
Journal:  PLoS One       Date:  2007-02-28       Impact factor: 3.240

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  8 in total

1.  Water-mediated correlations in DNA-enzyme interactions.

Authors:  P Kurian; A Capolupo; T J A Craddock; G Vitiello
Journal:  Phys Lett A       Date:  2017-10-23       Impact factor: 2.654

2.  Microtubules as a potential platform for energy transfer in biological systems: a target for implementing individualized, dynamic variability patterns to improve organ function.

Authors:  Yaron Ilan
Journal:  Mol Cell Biochem       Date:  2022-07-13       Impact factor: 3.842

3.  Oxidative species-induced excitonic transport in tubulin aromatic networks: Potential implications for neurodegenerative disease.

Authors:  P Kurian; T O Obisesan; T J A Craddock
Journal:  J Photochem Photobiol B       Date:  2017-08-24       Impact factor: 6.252

4.  Quantum mechanics of proteins in explicit water: The role of plasmon-like solute-solvent interactions.

Authors:  Martin Stöhr; Alexandre Tkatchenko
Journal:  Sci Adv       Date:  2019-12-13       Impact factor: 14.136

5.  Experimental evidence for long-distance electrodynamic intermolecular forces.

Authors:  Mathias Lechelon; Yoann Meriguet; Matteo Gori; Sandra Ruffenach; Ilaria Nardecchia; Elena Floriani; Dominique Coquillat; Frédéric Teppe; Sébastien Mailfert; Didier Marguet; Pierre Ferrier; Luca Varani; James Sturgis; Jeremie Torres; Marco Pettini
Journal:  Sci Adv       Date:  2022-02-16       Impact factor: 14.136

6.  Anesthetic Alterations of Collective Terahertz Oscillations in Tubulin Correlate with Clinical Potency: Implications for Anesthetic Action and Post-Operative Cognitive Dysfunction.

Authors:  Travis J A Craddock; Philip Kurian; Jordane Preto; Kamlesh Sahu; Stuart R Hameroff; Mariusz Klobukowski; Jack A Tuszynski
Journal:  Sci Rep       Date:  2017-08-29       Impact factor: 4.379

7.  Biological Entanglement-Like Effect After Communication of Fish Prior to X-Ray Exposure.

Authors:  Carmel Mothersill; Richard Smith; Jiaxi Wang; Andrej Rusin; Cris Fernandez-Palomo; Jennifer Fazzari; Colin Seymour
Journal:  Dose Response       Date:  2018-02-15       Impact factor: 2.658

8.  From Micro to Macro: A Relativistic Treatment of the Chiral Energy Shifts Caused by Static Electromagnetic Effects on Free Electrons.

Authors:  Philip Kurian
Journal:  Entropy (Basel)       Date:  2022-03-01       Impact factor: 2.524

  8 in total

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