Literature DB >> 26681459

Molecular control of activation and priming in macrophages.

Christopher K Glass1, Gioacchino Natoli2.   

Abstract

In tissues, macrophages are exposed to metabolic, homeostatic and immunoregulatory signals of local or systemic origin that influence their basal functions and responses to danger signals. Signal-transduction pathways regulated by extracellular signals are coupled to distinct sets of broadly expressed stimulus-regulated transcription factors whose ability to elicit gene-expression changes is influenced by the accessibility of their binding sites in the macrophage genome. In turn, accessibility of macrophage-specific transcriptional regulatory elements (enhancers and promoters) is specified by transcription factors that determine the macrophage lineage or impose their tissue-specific properties. Here we review recent findings that advance the understanding of mechanisms underlying priming and signal-dependent activation of macrophages and discuss the effect of genetic variation on these processes.

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Year:  2016        PMID: 26681459      PMCID: PMC4795476          DOI: 10.1038/ni.3306

Source DB:  PubMed          Journal:  Nat Immunol        ISSN: 1529-2908            Impact factor:   25.606


  86 in total

Review 1.  Chromatin contributions to the regulation of innate immunity.

Authors:  Stephen T Smale; Alexander Tarakhovsky; Gioacchino Natoli
Journal:  Annu Rev Immunol       Date:  2014-02-06       Impact factor: 28.527

2.  Genetic Variation Determines PPARγ Function and Anti-diabetic Drug Response In Vivo.

Authors:  Raymond E Soccio; Eric R Chen; Satyajit R Rajapurkar; Pegah Safabakhsh; Jill M Marinis; Joanna R Dispirito; Matthew J Emmett; Erika R Briggs; Bin Fang; Logan J Everett; Hee-Woong Lim; Kyoung-Jae Won; David J Steger; Ying Wu; Mete Civelek; Benjamin F Voight; Mitchell A Lazar
Journal:  Cell       Date:  2015-07-02       Impact factor: 41.582

3.  Nfkb1 activation by the E26 transformation-specific transcription factors PU.1 and Spi-B promotes Toll-like receptor-mediated splenic B cell proliferation.

Authors:  Stephen K H Li; Ali K Abbas; Lauren A Solomon; Gaëlle M N Groux; Rodney P DeKoter
Journal:  Mol Cell Biol       Date:  2015-03-02       Impact factor: 4.272

Review 4.  The selection and function of cell type-specific enhancers.

Authors:  Sven Heinz; Casey E Romanoski; Christopher Benner; Christopher K Glass
Journal:  Nat Rev Mol Cell Biol       Date:  2015-02-04       Impact factor: 94.444

5.  Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells.

Authors:  Erik Arner; Carsten O Daub; Kristoffer Vitting-Seerup; Robin Andersson; Berit Lilje; Finn Drabløs; Andreas Lennartsson; Michelle Rönnerblad; Olga Hrydziuszko; Morana Vitezic; Tom C Freeman; Ahmad M N Alhendi; Peter Arner; Richard Axton; J Kenneth Baillie; Anthony Beckhouse; Beatrice Bodega; James Briggs; Frank Brombacher; Margaret Davis; Michael Detmar; Anna Ehrlund; Mitsuhiro Endoh; Afsaneh Eslami; Michela Fagiolini; Lynsey Fairbairn; Geoffrey J Faulkner; Carmelo Ferrai; Malcolm E Fisher; Lesley Forrester; Daniel Goldowitz; Reto Guler; Thomas Ha; Mitsuko Hara; Meenhard Herlyn; Tomokatsu Ikawa; Chieko Kai; Hiroshi Kawamoto; Levon M Khachigian; S Peter Klinken; Soichi Kojima; Haruhiko Koseki; Sarah Klein; Niklas Mejhert; Ken Miyaguchi; Yosuke Mizuno; Mitsuru Morimoto; Kelly J Morris; Christine Mummery; Yutaka Nakachi; Soichi Ogishima; Mariko Okada-Hatakeyama; Yasushi Okazaki; Valerio Orlando; Dmitry Ovchinnikov; Robert Passier; Margaret Patrikakis; Ana Pombo; Xian-Yang Qin; Sugata Roy; Hiroki Sato; Suzana Savvi; Alka Saxena; Anita Schwegmann; Daisuke Sugiyama; Rolf Swoboda; Hiroshi Tanaka; Andru Tomoiu; Louise N Winteringham; Ernst Wolvetang; Chiyo Yanagi-Mizuochi; Misako Yoneda; Susan Zabierowski; Peter Zhang; Imad Abugessaisa; Nicolas Bertin; Alexander D Diehl; Shiro Fukuda; Masaaki Furuno; Jayson Harshbarger; Akira Hasegawa; Fumi Hori; Sachi Ishikawa-Kato; Yuri Ishizu; Masayoshi Itoh; Tsugumi Kawashima; Miki Kojima; Naoto Kondo; Marina Lizio; Terrence F Meehan; Christopher J Mungall; Mitsuyoshi Murata; Hiromi Nishiyori-Sueki; Serkan Sahin; Sayaka Nagao-Sato; Jessica Severin; Michiel J L de Hoon; Jun Kawai; Takeya Kasukawa; Timo Lassmann; Harukazu Suzuki; Hideya Kawaji; Kim M Summers; Christine Wells; David A Hume; Alistair R R Forrest; Albin Sandelin; Piero Carninci; Yoshihide Hayashizaki
Journal:  Science       Date:  2015-02-12       Impact factor: 47.728

Review 6.  Regulation of type I interferon responses.

Authors:  Lionel B Ivashkiv; Laura T Donlin
Journal:  Nat Rev Immunol       Date:  2014-01       Impact factor: 53.106

7.  Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types.

Authors:  Diego Adhemar Jaitin; Ephraim Kenigsberg; Hadas Keren-Shaul; Naama Elefant; Franziska Paul; Irina Zaretsky; Alexander Mildner; Nadav Cohen; Steffen Jung; Amos Tanay; Ido Amit
Journal:  Science       Date:  2014-02-14       Impact factor: 47.728

8.  Heme-mediated SPI-C induction promotes monocyte differentiation into iron-recycling macrophages.

Authors:  Malay Haldar; Masako Kohyama; Alex Yick-Lun So; Wumesh Kc; Xiaodi Wu; Carlos G Briseño; Ansuman T Satpathy; Nicole M Kretzer; Hisashi Arase; Namakkal S Rajasekaran; Li Wang; Takeshi Egawa; Kazuhiko Igarashi; David Baltimore; Theresa L Murphy; Kenneth M Murphy
Journal:  Cell       Date:  2014-03-13       Impact factor: 41.582

9.  Integrative analysis of 111 reference human epigenomes.

Authors:  Anshul Kundaje; Wouter Meuleman; Jason Ernst; Misha Bilenky; Angela Yen; Alireza Heravi-Moussavi; Pouya Kheradpour; Zhizhuo Zhang; Jianrong Wang; Michael J Ziller; Viren Amin; John W Whitaker; Matthew D Schultz; Lucas D Ward; Abhishek Sarkar; Gerald Quon; Richard S Sandstrom; Matthew L Eaton; Yi-Chieh Wu; Andreas R Pfenning; Xinchen Wang; Melina Claussnitzer; Yaping Liu; Cristian Coarfa; R Alan Harris; Noam Shoresh; Charles B Epstein; Elizabeta Gjoneska; Danny Leung; Wei Xie; R David Hawkins; Ryan Lister; Chibo Hong; Philippe Gascard; Andrew J Mungall; Richard Moore; Eric Chuah; Angela Tam; Theresa K Canfield; R Scott Hansen; Rajinder Kaul; Peter J Sabo; Mukul S Bansal; Annaick Carles; Jesse R Dixon; Kai-How Farh; Soheil Feizi; Rosa Karlic; Ah-Ram Kim; Ashwinikumar Kulkarni; Daofeng Li; Rebecca Lowdon; GiNell Elliott; Tim R Mercer; Shane J Neph; Vitor Onuchic; Paz Polak; Nisha Rajagopal; Pradipta Ray; Richard C Sallari; Kyle T Siebenthall; Nicholas A Sinnott-Armstrong; Michael Stevens; Robert E Thurman; Jie Wu; Bo Zhang; Xin Zhou; Arthur E Beaudet; Laurie A Boyer; Philip L De Jager; Peggy J Farnham; Susan J Fisher; David Haussler; Steven J M Jones; Wei Li; Marco A Marra; Michael T McManus; Shamil Sunyaev; James A Thomson; Thea D Tlsty; Li-Huei Tsai; Wei Wang; Robert A Waterland; Michael Q Zhang; Lisa H Chadwick; Bradley E Bernstein; Joseph F Costello; Joseph R Ecker; Martin Hirst; Alexander Meissner; Aleksandar Milosavljevic; Bing Ren; John A Stamatoyannopoulos; Ting Wang; Manolis Kellis
Journal:  Nature       Date:  2015-02-19       Impact factor: 69.504

10.  H3K4 mono- and di-methyltransferase MLL4 is required for enhancer activation during cell differentiation.

Authors:  Ji-Eun Lee; Chaochen Wang; Shiliyang Xu; Young-Wook Cho; Lifeng Wang; Xuesong Feng; Anne Baldridge; Vittorio Sartorelli; Lenan Zhuang; Weiqun Peng; Kai Ge
Journal:  Elife       Date:  2013-12-24       Impact factor: 8.140

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  183 in total

Review 1.  Genome-Wide Approaches to Defining Macrophage Identity and Function.

Authors:  Gregory J Fonseca; Jason S Seidman; Christopher K Glass
Journal:  Microbiol Spectr       Date:  2016-10

2.  TRPV4 Channel Signaling in Macrophages Promotes Gastrointestinal Motility via Direct Effects on Smooth Muscle Cells.

Authors:  Jialie Luo; Aihua Qian; Landon K Oetjen; Weihua Yu; Pu Yang; Jing Feng; Zili Xie; Shenbin Liu; Shijin Yin; Dari Dryn; Jizhong Cheng; Terrence E Riehl; Alexander V Zholos; William F Stenson; Brian S Kim; Hongzhen Hu
Journal:  Immunity       Date:  2018-06-26       Impact factor: 31.745

3.  SREBP1 Contributes to Resolution of Pro-inflammatory TLR4 Signaling by Reprogramming Fatty Acid Metabolism.

Authors:  Yumiko Oishi; Nathanael J Spann; Verena M Link; Evan D Muse; Tobias Strid; Chantle Edillor; Matthew J Kolar; Takashi Matsuzaka; Sumio Hayakawa; Jenhan Tao; Minna U Kaikkonen; Aaron F Carlin; Michael T Lam; Ichiro Manabe; Hitoshi Shimano; Alan Saghatelian; Christopher K Glass
Journal:  Cell Metab       Date:  2016-12-29       Impact factor: 27.287

4.  Metabolic Alterations Contribute to Enhanced Inflammatory Cytokine Production in Irgm1-deficient Macrophages.

Authors:  Elyse A Schmidt; Brian E Fee; Stanley C Henry; Amanda G Nichols; Mari L Shinohara; Jeffrey C Rathmell; Nancie J MacIver; Jörn Coers; Olga R Ilkayeva; Timothy R Koves; Gregory A Taylor
Journal:  J Biol Chem       Date:  2017-02-01       Impact factor: 5.157

5.  Loss of the co-repressor GPS2 sensitizes macrophage activation upon metabolic stress induced by obesity and type 2 diabetes.

Authors:  Rongrong Fan; Amine Toubal; Saioa Goñi; Karima Drareni; Zhiqiang Huang; Fawaz Alzaid; Raphaelle Ballaire; Patricia Ancel; Ning Liang; Anastasios Damdimopoulos; Isabelle Hainault; Antoine Soprani; Judith Aron-Wisnewsky; Fabienne Foufelle; Toby Lawrence; Jean-Francois Gautier; Nicolas Venteclef; Eckardt Treuter
Journal:  Nat Med       Date:  2016-06-06       Impact factor: 53.440

6.  Global modulation in DNA epigenetics during pro-inflammatory macrophage activation.

Authors:  Nikhil Jain; Tamar Shahal; Tslil Gabrieli; Noa Gilat; Dmitry Torchinsky; Yael Michaeli; Viola Vogel; Yuval Ebenstein
Journal:  Epigenetics       Date:  2019-07-08       Impact factor: 4.528

7.  Epigenetic control of early dendritic cell lineage specification by the transcription factor IRF8 in mice.

Authors:  Daisuke Kurotaki; Wataru Kawase; Haruka Sasaki; Jun Nakabayashi; Akira Nishiyama; Herbert C Morse; Keiko Ozato; Yutaka Suzuki; Tomohiko Tamura
Journal:  Blood       Date:  2019-02-22       Impact factor: 22.113

8.  Common and Differential Transcriptional Actions of Nuclear Receptors Liver X Receptors α and β in Macrophages.

Authors:  Ana Ramón-Vázquez; Juan Vladimir de la Rosa; Carlos Tabraue; Felix Lopez; Bonifacio Nicolas Díaz-Chico; Lisardo Bosca; Peter Tontonoz; Susana Alemany; Antonio Castrillo
Journal:  Mol Cell Biol       Date:  2019-02-15       Impact factor: 4.272

Review 9.  Metabolic and Epigenetic Coordination of T Cell and Macrophage Immunity.

Authors:  Anthony T Phan; Ananda W Goldrath; Christopher K Glass
Journal:  Immunity       Date:  2017-05-16       Impact factor: 31.745

Review 10.  Macrophage immunomodulation in chronic osteolytic diseases-the case of periodontitis.

Authors:  Corneliu Sima; Ana Viniegra; Michael Glogauer
Journal:  J Leukoc Biol       Date:  2018-11-19       Impact factor: 4.962

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