Literature DB >> 26681340

Determining the familial risk distribution of colorectal cancer: a data mining approach.

Rowena Chau1, Mark A Jenkins1, Daniel D Buchanan1,2, Driss Ait Ouakrim1, Graham G Giles1,3, Graham Casey4, Steven Gallinger5,6, Robert W Haile7, Loic Le Marchand8, Polly A Newcomb9, Noralane M Lindor10, John L Hopper1, Aung Ko Win11.   

Abstract

This study was aimed to characterize the distribution of colorectal cancer risk using family history of cancers by data mining. Family histories for 10,066 colorectal cancer cases recruited to population cancer registries of the Colon Cancer Family Registry were analyzed using a data mining framework. A novel index was developed to quantify familial cancer aggregation. Artificial neural network was used to identify distinct categories of familial risk. Standardized incidence ratios (SIRs) and corresponding 95% confidence intervals (CIs) of colorectal cancer were calculated for each category. We identified five major, and 66 minor categories of familial risk for developing colorectal cancer. The distribution the major risk categories were: (1) 7% of families (SIR = 7.11; 95% CI 6.65-7.59) had a strong family history of colorectal cancer; (2) 13% of families (SIR = 2.94; 95% CI 2.78-3.10) had a moderate family history of colorectal cancer; (3) 11% of families (SIR = 1.23; 95% CI 1.12-1.36) had a strong family history of breast cancer and a weak family history of colorectal cancer; (4) 9 % of families (SIR = 1.06; 95 % CI 0.96-1.18) had strong family history of prostate cancer and weak family history of colorectal cancer; and (5) 60% of families (SIR = 0.61; 95% CI 0.57-0.65) had a weak family history of all cancers. There is a wide variation of colorectal cancer risk that can be categorized by family history of cancer, with a strong gradient of colorectal cancer risk between the highest and lowest risk categories. The risk of colorectal cancer for people with the highest risk category of family history (7% of the population) was 12-times that for people in the lowest risk category (60%) of the population. Data mining was proven an effective approach for gaining insight into the underlying cancer aggregation patterns and for categorizing familial risk of colorectal cancer.

Entities:  

Keywords:  Colorectal cancer; Data mining; Familial aggregation; Familial risk

Mesh:

Substances:

Year:  2016        PMID: 26681340      PMCID: PMC4803603          DOI: 10.1007/s10689-015-9860-6

Source DB:  PubMed          Journal:  Fam Cancer        ISSN: 1389-9600            Impact factor:   2.446


  20 in total

Review 1.  Measures of familial aggregation depend on definition of family history: meta-analysis for colorectal cancer.

Authors:  Laura Baglietto; Mark A Jenkins; Gianluca Severi; Graham G Giles; D Timothy Bishop; Peter Boyle; John L Hopper
Journal:  J Clin Epidemiol       Date:  2006-02       Impact factor: 6.437

2.  A nonparametric test of heterogeneity of family risk.

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4.  A cohort study of cancer risk in relation to family histories of cancer in the Utah population database.

Authors:  Richard A Kerber; Elizabeth O'Brien
Journal:  Cancer       Date:  2005-05-01       Impact factor: 6.860

5.  A prospective study of family history and the risk of colorectal cancer.

Authors:  C S Fuchs; E L Giovannucci; G A Colditz; D J Hunter; F E Speizer; W C Willett
Journal:  N Engl J Med       Date:  1994-12-22       Impact factor: 91.245

6.  Colon Cancer Family Registry: an international resource for studies of the genetic epidemiology of colon cancer.

Authors:  Polly A Newcomb; John Baron; Michelle Cotterchio; Steve Gallinger; John Grove; Robert Haile; David Hall; John L Hopper; Jeremy Jass; Loïc Le Marchand; Paul Limburg; Noralane Lindor; John D Potter; Allyson S Templeton; Steve Thibodeau; Daniela Seminara
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2007-11-02       Impact factor: 4.254

Review 7.  Hereditary colorectal cancer syndromes: familial adenomatous polyposis and lynch syndrome.

Authors:  Wigdan Al-Sukhni; Melyssa Aronson; Steven Gallinger
Journal:  Surg Clin North Am       Date:  2008-08       Impact factor: 2.741

8.  Familial aggregation of a disease consequent upon correlation between relatives in a risk factor measured on a continuous scale.

Authors:  J L Hopper; J B Carlin
Journal:  Am J Epidemiol       Date:  1992-11-01       Impact factor: 4.897

9.  Family history of colorectal adenomatous polyps and increased risk for colorectal cancer.

Authors:  H Ahsan; A I Neugut; G C Garbowski; J S Jacobson; K A Forde; M R Treat; J D Waye
Journal:  Ann Intern Med       Date:  1998-06-01       Impact factor: 25.391

10.  A comprehensive survey of cancer risks in extended families.

Authors:  Craig C Teerlink; Frederick S Albright; Lauro Lins; Lisa A Cannon-Albright
Journal:  Genet Med       Date:  2012-01       Impact factor: 8.822

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  1 in total

1.  Whole exome sequencing identifies novel germline variants of SLC15A4 gene as potentially cancer predisposing in familial colorectal cancer.

Authors:  Diamanto Skopelitou; Aayushi Srivastava; Beiping Miao; Abhishek Kumar; Dagmara Dymerska; Nagarajan Paramasivam; Matthias Schlesner; Jan Lubinski; Kari Hemminki; Asta Försti; Obul Reddy Bandapalli
Journal:  Mol Genet Genomics       Date:  2022-05-13       Impact factor: 2.980

  1 in total

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