Literature DB >> 26680015

Systems Proteomics View of the Endogenous Human Claudin Protein Family.

Fei Liu, Michael Koval1, Shoba Ranganathan, Susan Fanayan, William S Hancock2, Emma K Lundberg3, Ronald C Beavis4, Lydie Lane5, Paula Duek5, Leon McQuade, Neil L Kelleher6, Mark S Baker.   

Abstract

Claudins are the major transmembrane protein components of tight junctions in human endothelia and epithelia. Tissue-specific expression of claudin members suggests that this protein family is not only essential for sustaining the role of tight junctions in cell permeability control but also vital in organizing cell contact signaling by protein-protein interactions. How this protein family is collectively processed and regulated is key to understanding the role of junctional proteins in preserving cell identity and tissue integrity. The focus of this review is to first provide a brief overview of the functional context, on the basis of the extensive body of claudin biology research that has been thoroughly reviewed, for endogenous human claudin members and then ascertain existing and future proteomics techniques that may be applicable to systematically characterizing the chemical forms and interacting protein partners of this protein family in human. The ability to elucidate claudin-based signaling networks may provide new insight into cell development and differentiation programs that are crucial to tissue stability and manipulation.

Entities:  

Keywords:  Membrane protein complexes; cell-contact signaling; chemical proteomics; membrane proteomics; systems proteomics; targeted proteomics; top-down proteomics

Mesh:

Substances:

Year:  2016        PMID: 26680015      PMCID: PMC4777318          DOI: 10.1021/acs.jproteome.5b00769

Source DB:  PubMed          Journal:  J Proteome Res        ISSN: 1535-3893            Impact factor:   4.466


  283 in total

1.  Resistance of cell membranes to different detergents.

Authors:  Sebastian Schuck; Masanori Honsho; Kim Ekroos; Andrej Shevchenko; Kai Simons
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-29       Impact factor: 11.205

2.  Np9 protein of human endogenous retrovirus K interacts with ligand of numb protein X.

Authors:  Vivienne Armbruester; Marlies Sauter; Klaus Roemer; Barbara Best; Steffen Hahn; Achille Nty; Andreas Schmid; Stephan Philipp; Anja Mueller; Nikolaus Mueller-Lantzsch
Journal:  J Virol       Date:  2004-10       Impact factor: 5.103

3.  Automated phosphoproteome analysis for cultured cancer cells by two-dimensional nanoLC-MS using a calcined titania/C18 biphasic column.

Authors:  Koshi Imami; Naoyuki Sugiyama; Yutaka Kyono; Masaru Tomita; Yasushi Ishihama
Journal:  Anal Sci       Date:  2008-01       Impact factor: 2.081

Review 4.  Biology of claudins.

Authors:  Susanne Angelow; Robert Ahlstrom; Alan S L Yu
Journal:  Am J Physiol Renal Physiol       Date:  2008-05-14

5.  Mass spectrometric protein identification using the global proteome machine.

Authors:  David Fenyö; Jan Eriksson; Ronald Beavis
Journal:  Methods Mol Biol       Date:  2010

Review 6.  Activity-based probes: discovering new biology and new drug targets.

Authors:  William P Heal; T H Tam Dang; Edward W Tate
Journal:  Chem Soc Rev       Date:  2010-10-01       Impact factor: 54.564

7.  Proteomics strategy to identify substrates of LNX, a PDZ domain-containing E3 ubiquitin ligase.

Authors:  Zhengguang Guo; Eli Song; Sucan Ma; Xiaorong Wang; Shijuan Gao; Chen Shao; Siqi Hu; Lulu Jia; Rui Tian; Tao Xu; Youhe Gao
Journal:  J Proteome Res       Date:  2012-08-29       Impact factor: 4.466

Review 8.  Regulation and roles for claudin-family tight junction proteins.

Authors:  Mary K Findley; Michael Koval
Journal:  IUBMB Life       Date:  2009-04       Impact factor: 3.885

9.  Claudin-based tight junctions are crucial for the mammalian epidermal barrier: a lesson from claudin-1-deficient mice.

Authors:  Mikio Furuse; Masaki Hata; Kyoko Furuse; Yoko Yoshida; Akinori Haratake; Yoshinobu Sugitani; Tetsuo Noda; Akiharu Kubo; Shoichiro Tsukita
Journal:  J Cell Biol       Date:  2002-03-11       Impact factor: 10.539

10.  A large-scale proteomic analysis of human embryonic stem cells.

Authors:  Thomas C Schulz; Anna Maria Swistowska; Ying Liu; Andrzej Swistowski; Gail Palmarini; Sandii N Brimble; Eric Sherrer; Allan J Robins; Mahendra S Rao; Xianmin Zeng
Journal:  BMC Genomics       Date:  2007-12-27       Impact factor: 3.969

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  9 in total

Review 1.  Cell Biology of Tight Junction Barrier Regulation and Mucosal Disease.

Authors:  Aaron Buckley; Jerrold R Turner
Journal:  Cold Spring Harb Perspect Biol       Date:  2018-01-02       Impact factor: 10.005

2.  Glycoproteins in Claudin-Low Breast Cancer Cell Lines Have a Unique Expression Profile.

Authors:  Ten-Yang Yen; Spencer Bowen; Roger Yen; Alexandra Piryatinska; Bruce A Macher; Leslie C Timpe
Journal:  J Proteome Res       Date:  2017-03-21       Impact factor: 4.466

3.  Human Claudin-7 cis-Interactions Are Not Crucial for Membrane-Membrane (Trans-) Interactions.

Authors:  Lena Ahlswede; Carmen Siebenaller; Benedikt Junglas; Nadja Hellmann; Dirk Schneider
Journal:  Front Mol Biosci       Date:  2022-06-27

Review 4.  Novel Aspects of Renal Magnesium Homeostasis.

Authors:  Paula Giménez-Mascarell; Carlotta Else Schirrmacher; Luis Alfonso Martínez-Cruz; Dominik Müller
Journal:  Front Pediatr       Date:  2018-04-09       Impact factor: 3.418

5.  Newly synthesized claudins but not occludin are added to the basal side of the tight junction.

Authors:  Christina M Van Itallie; Karin Fredriksson Lidman; Amber Jean Tietgens; James Melvin Anderson
Journal:  Mol Biol Cell       Date:  2019-04-03       Impact factor: 4.138

6.  Comprehensive analysis of metastatic gastric cancer tumour cells using single-cell RNA-seq.

Authors:  Bin Wang; Yingyi Zhang; Tao Qing; Kaichen Xing; Jie Li; Timing Zhen; Sibo Zhu; Xianbao Zhan
Journal:  Sci Rep       Date:  2021-01-13       Impact factor: 4.379

7.  Gene expression profiling to predict recurrence of advanced squamous cell carcinoma of the tongue: discovery and external validation.

Authors:  Tomohiro Enokida; Satoshi Fujii; Mari Takahashi; Youichi Higuchi; Shogo Nomura; Tetsuro Wakasugi; Tomoko Yamazaki; Ryuichi Hayashi; Atsushi Ohtsu; Makoto Tahara
Journal:  Oncotarget       Date:  2017-06-27

Review 8.  Tight Junctions as Targets and Effectors of Mucosal Immune Homeostasis.

Authors:  Li Zuo; Wei-Ting Kuo; Jerrold R Turner
Journal:  Cell Mol Gastroenterol Hepatol       Date:  2020-04-15

9.  LY75 Ablation Mediates Mesenchymal-Epithelial Transition (MET) in Epithelial Ovarian Cancer (EOC) Cells Associated with DNA Methylation Alterations and Suppression of the Wnt/β-Catenin Pathway.

Authors:  Sadia Mehdi; Magdalena Bachvarova; Marie-Pier Scott-Boyer; Arnaud Droit; Dimcho Bachvarov
Journal:  Int J Mol Sci       Date:  2020-03-07       Impact factor: 5.923

  9 in total

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