| Literature DB >> 26675765 |
Jinyuan Mao1, Jessica J Vanderlelie2, Anthony V Perkins2, Christopher W G Redman3, Kourosh R Ahmadi4, Margaret P Rayman5.
Abstract
BACKGROUND: Low selenium status in pregnancy has been associated with a number of adverse conditions. In nonpregnant populations, the selenium status or response to supplementation has been associated with polymorphisms in dimethylglycine dehydrogenase (DMGDH), selenoprotein P (SEPP1) and the glutathione peroxidases [cytosolic glutathione peroxidase (GPx1) and phospholipid glutathione peroxidase (GPx4)].Entities:
Keywords: DMGDH; SEPP1; polymorphisms; pregnancy; selenium status
Mesh:
Substances:
Year: 2015 PMID: 26675765 PMCID: PMC4691667 DOI: 10.3945/ajcn.115.114231
Source DB: PubMed Journal: Am J Clin Nutr ISSN: 0002-9165 Impact factor: 7.045
Characteristics of candidate SNPs investigated and functions of the proteins they encode
| Chromosome | Gene | Function | SNP | Position | SNP location | Allele, major/minor | MAF, fraction | Genotype count | |
| 5q14 | Encodes the enzyme DMGDH, which is involved in the catabolism of choline that catalyzes the oxidative demethylation of dimethylglycine to form sarcosine. Linked to 1-C metabolism. | rs921943 | 79020653 | Intron | G/A | 0.302 | 111/95/21 | 0.876 | |
| 5q31 | Encodes the extracellular SEPP1 that contains multiple selenocysteine residues. Transports selenium in the bloodstream to tissues such as the brain, testis, and placenta. Functions as an antioxidant in the extracellular space. | rs3877899 | 42801166 | Ala234Thr | G/A | 0.239 | 131/79/14 | 0.713 | |
| 5q31 | rs7579 | 42800706 | 3′UTR | G/A | 0.280 | 121/82/22 | 0.184 | ||
| 3p21 | Encodes GPx1, which detoxifies hydrogen peroxide and lipid hydroperoxides and is one of the most-important antioxidant enzymes in humans. | rs1050450 | 49357401 | Pro198Leu | C/T | 0.324 | 104/96/25 | 0.761 | |
| 19p13 | Encodes GPx4, which can reduce hydrogen peroxide and lipid hydroperoxides in biological membranes. | rs713041 | 1106616 | 3′UTR | C/T | 0.456 | 63/119/43 | 0.350 |
DMGDH, dimethylglycine dehydrogenase; GPx1, cytosolic glutathione peroxidase; GPx4, phospholipid glutathione peroxidase; HWE, Hardy-Weinberg equilibrium; MAF, minor allele frequency; SEPP1, selenoprotein P; SNP, single nucleotide polymorphism; UTR, untranslated region.
From the dbSNP database http://www.ncbi.nlm.nih.gov/snp (accessed 21 April 2015).
Whole-blood selenium, toenail selenium, and GPx3 activity at baseline by genotype
| Geometric mean (95% CI) | ||||||||
| Matrix and SNP | Subjects, | GG/CC | GA/CT | AA/TT | β ± SE | |||
| Whole-blood selenium, μmol/L | ||||||||
| rs921943 | 227 | 1.29 (1.25,1.33) | 1.36 (1.31, 1.40) | 1.37 (1.27, 1.47) | 0.016 ± 0.007 | 0.020 | 0.033 | 0.032 |
| rs3877899 | 224 | 1.34 (1.30, 1.38) | 1.30 (1.25, 1.34) | 1.28 (1.17, 1.40) | −0.013 ± 0.008 | 0.012 | 0.101 | 0.148 |
| rs7579 | 225 | 1.32 (1.28, 1.36) | 1.32 (1.27, 1.37) | 1.36 (1.27,1.46) | 0.003 ± 0.007 | 7 × 10−4 | 0.696 | 0.511 |
| rs1050450 | 225 | 1.34 (1.30, 1.38) | 1.31 (1.27, 1.36) | 1.31 (1.22, 1.40) | −0.006 ± 0.007 | 0.003 | 0.380 | 0.404 |
| rs713041 | 225 | 1.32 (1.26, 1.37) | 1.30 (1.27, 1.34) | 1.38 (1.31, 1.45) | 0.008 ± 0.007 | 0.005 | 0.282 | 0.260 |
| Toenail selenium, μg/g | ||||||||
| rs921943 | 216 | 0.604 (0.588, 0.621) | 0.624 (0.606, 0.643) | 0.638 (0.601, 0.678) | 0.012 ± 0.006 | 0.017 | 0.053 | 0.045 |
| rs3877899 | 213 | 0.624 (0.609, 0.640) | 0.602 (0.583, 0.622) | 0.612 (0.568, 0.659) | −0.010 ± 0.007 | 0.010 | 0.151 | 0.236 |
| rs7579 | 214 | 0.620 (0.605, 0.637) | 0.606 (0.587, 0.625) | 0.635 (0.596, 0.677) | −0.001 ± 0.006 | 5 × 10−5 | 0.918 | 0.910 |
| rs1050450 | 214 | 0.604 (0.588, 0.622) | 0.625 (0.607, 0.643) | 0.629 (0.594, 0.665) | 0.010 ± 0.006 | 0.013 | 0.099 | 0.086 |
| rs713041 | 214 | 0.617 (0.595, 0.639) | 0.617 (0.600, 0.633) | 0.611 (0.586, 0.638) | −0.002 ± 0.006 | 4 × 10−4 | 0.775 | 0.796 |
| GPx3 activity, U/L | ||||||||
| rs921943 | 225 | 72.5 (70.1, 75.0) | 74.8 (72.2, 77.6) | 73.5 (68.1, 79.4) | 0.007 ± 0.007 | 0.003 | 0.387 | 0.342 |
| rs3877899 | 222 | 74.0 (71.7, 76.3) | 73.3 (70.4, 76.3) | 71.0 (64.5, 78.1) | −0.006 ± 0.009 | 0.002 | 0.475 | 0.585 |
| rs7579 | 223 | 73.1 (70.8, 75.6) | 74.3 (71.5, 77.3) | 73.1 (67.7, 78.8) | 0.002 ± 0.008 | 3 × 10−4 | 0.790 | 0.667 |
| rs1050450 | 223 | 74.3 (71.7, 77.0) | 72.0 (69.5, 74.7) | 76.6 (71.4, 82.2) | −0.0002 ± 0.008 | 5 × 10−6 | 0.974 | 0.914 |
| rs713041 | 223 | 74.0 (70.7, 77.4) | 73.3 (71.0, 75.8) | 73.6 (69.7, 77.7) | −0.002 ± 0.008 | 2 × 10−4 | 0.845 | 0.929 |
All genetic analyses were carried out with the use of the PLINK v1.9 analysis toolset (20, 21), which performs a range of genetic analyses through a flexible regression framework. GPx3, plasma glutathione peroxidase; SNP, single nucleotide polymorphism.
All traits are presented on the natural scale for ease of interpretation.
Adjusted for age, gestational age, BMI at baseline, age at which education ceased (y), and social class (dichotomized).
Longitudinal changes in whole-blood selenium and GPx3 activity in the placebo group by genotype
| Mean ± SD | ||||||||
| Variable change and SNP | Subjects, | GG/CC | GA/CT | AA/TT | β ± SE | |||
| Change in whole-blood selenium, % | ||||||||
| rs921943 | 109 | −11.2 ± 8.4 | −13.4 ± 10.4 | −12.0 ± 10.2 | −0.011 ± 0.014 | 0.006 | 0.423 | 0.504 |
| rs3877899 | 108 | −13.9 ± 10.0 | −10.0 ± 7.2 | 0.3 ± 7.0 | 0.048 ± 0.016 | 0.080 | 0.003 | 0.005 |
| rs7579 | 108 | −11.0 ± 10.5 | −13.2 ± 8.3 | −16.5 ± 6.1 | −0.025 ± 0.014 | 0.028 | 0.083 | 0.088 |
| rs1050450 | 107 | −11.6 ± 8.9 | −12.6 ± 10.6 | −13.7 ± 8.4 | −0.011 ± 0.014 | 0.005 | 0.457 | 0.628 |
| rs713041 | 108 | −13.4 ± 8.6 | −12.6 ± 9.9 | −10.0 ± 9.6 | 0.016 ± 0.013 | 0.014 | 0.227 | 0.179 |
| Change in GPx3 activity, % | ||||||||
| rs921943 | 107 | 0.4 ± 20.9 | 6.0 ± 30.1 | 3.9 ± 15.7 | 0.032 ± 0.037 | 0.007 | 0.393 | 0.402 |
| rs3877899 | 106 | 1.2 ± 20.9 | 4.9 ± 30.4 | 18.8 ± 31.0 | 0.053 ± 0.044 | 0.014 | 0.236 | 0.128 |
| rs7579 | 106 | 5.0 ± 26.2 | 1.7 ± 22.8 | 0.8 ± 30.5 | −0.026 ± 0.039 | 0.004 | 0.505 | 0.484 |
| rs1050450 | 105 | −0.1 ± 22.1 | 8.1 ± 28.2 | −2.1 ± 24.0 | 0.025 ± 0.038 | 0.004 | 0.509 | 0.658 |
| rs713041 | 106 | 2.6 ± 29.7 | 4.2 ± 22.0 | 1.4 ± 26.8 | −0.003 ± 0.036 | 9 × 10−5 | 0.923 | 0.876 |
All genetic analyses were carried out with the use of the PLINK v1.9 analysis toolset (20, 21), which performs a range of genetic analyses through a flexible regression framework. GPx3, plasma glutathione peroxidase; SNP, single nucleotide polymorphism.
Adjusted for age, gestational age, and BMI at baseline.
Changes in whole-blood selenium and GPx3 activity after selenium supplementation by genotype
| Mean ± SD | ||||||||
| Variable change and SNP | Subjects, | GG/CC | GA/CT | AA/TT | β ± SE | |||
| Change in whole-blood selenium, % | ||||||||
| rs921943 | 104 | 42.3 ± 20.3 | 43.0 ± 20.1 | 43.1 ± 41.3 | 0.005 ± 0.033 | 2 × 10−4 | 0.890 | 0.871 |
| rs3877899 | 102 | 42.1 ± 25.0 | 44.7 ± 19.9 | 39.9 ± 12.4 | 0.004 ± 0.035 | 1 × 10−4 | 0.914 | 0.879 |
| rs7579 | 104 | 44.0 ± 23.5 | 43.7 ± 20.6 | 32.0 ± 21.9 | −0.041 ± 0.032 | 0.015 | 0.209 | 0.230 |
| rs1050450 | 104 | 40.2 ± 23.7 | 45.1 ± 21.9 | 43.1 ± 20.5 | 0.023 ± 0.031 | 0.006 | 0.454 | 0.455 |
| rs713041 | 103 | 40.9 ± 16.1 | 42.0 ± 26.1 | 46.9 ± 20.5 | 0.028 ± 0.032 | 2 × 10−4 | 0.390 | 0.575 |
| Change in GPx3 activity, % | ||||||||
| rs921943 | 104 | 9.5 ± 23.4 | 5.8 ± 25.3 | −4.0 ± 18.8 | −0.056 ± 0.036 | 0.023 | 0.121 | 0.144 |
| rs3877899 | 102 | 2.0 ± 21.5 | 14.4 ± 26.9 | 13.7 ± 21.2 | 0.086 ± 0.036 | 0.053 | 0.020 | 0.010 |
| rs7579 | 104 | 10.7 ± 25.0 | 1.9 ± 22.4 | 5.6 ± 20.8 | −0.047 ± 0.034 | 0.018 | 0.180 | 0.187 |
| rs1050450 | 104 | 9.5 ± 27.4 | 4.9 ± 18.0 | 5.3 ± 27.5 | −0.027 ± 0.033 | 0.007 | 0.407 | 0.442 |
| rs713041 | 103 | 3.6 ± 18.4 | 8.5 ± 28.3 | 7.7 ± 18.0 | 0.024 ± 0.035 | 0.005 | 0.487 | 0.622 |
All genetic analyses were carried out with the use of the PLINK v1.9 analysis toolset (20, 21),which performs a range of genetic analyses through a flexible regression framework. GPx3, plasma glutathione peroxidase; SNP, single nucleotide polymorphism.
Adjusted for age, gestational age and BMI at baseline.