| Literature DB >> 26664786 |
Wenpeng Liu1, Shichao Ge2, Yan Liu1, Can Wei1, Yunlong Ding1, Aimin Chen1, Qiyao Wu2, Yuqing Zhang2.
Abstract
BACKGROUND: Multiligand receptor for advanced glycation end products (RAGE), osteoprotegerin, and Golgb1 genes may be implicated in atherosclerosis and vascular diseases. Single nucleotide polymorphisms (SNPs) rs1035798 in RAGE gene, rs2073617 and rs2073618 in TNFRSF11B, and rs3732410 in Golgb1 will be investigated on whether there is an association with hemorrhagic stroke (HS) in Chinese population.Entities:
Keywords: Association; Golgb1 gene; RAGE gene; TNFRSF11B gene; genotype; hemorrhagic stroke; single nucleotide polymorphisms
Mesh:
Substances:
Year: 2015 PMID: 26664786 PMCID: PMC4667756 DOI: 10.1002/brb3.395
Source DB: PubMed Journal: Brain Behav Impact factor: 2.708
Oligonucleotide sequences used for genotyping
| Genes | SNPs | Primers | Sequences |
|---|---|---|---|
|
| rs1035798 | First | ACGTTGGATGTTCCCAGGAATCTCTGAAGG |
| Second | ACGTTGGATGTGACTTCCACTGGCCTCATT | ||
| Extension | CCTCTTAGTCTCCACAC | ||
|
| rs2073617 | First | ACGTTGGATGTTTTTAGGAAGCTTGGGCGG |
| Second | ACGTTGGATGTTTCCGCCCCAGCCCTGAAA | ||
| Extension | GTTGCCGCCCCAGCCCTGAAAGCGTTAA | ||
| rs2073618 | First | ACGTTGGATGCCAGGGACTTACCACGAGC | |
| Second | ACGTTGGATGTCCAAGCCCCTGAGGTTTC | ||
| Extension | GCGGTTTCCGGGGACCACAATGAACAA | ||
|
| rs3732410 | First | ACGTTGGATGCCTTGCTTTGCTCATCAAAC |
| Second | ACGTTGGATGAGAAAGACATCTCAGGGAGG | ||
| Extension | GGGAAGCAACAGAAAGATGACT |
Characteristics of HS patients and controls
| Characteristic | ≤50 year group | >50 year group | ||||
|---|---|---|---|---|---|---|
| Cases | Control |
| Case | Control |
| |
| No. of subjects | 33 | 255 | 166 | 146 | ||
| Age (years) | 46 ± 3.5 | 34 ± 9.3 |
| 67 ± 8.4 | 61 ± 5.9 |
|
| Gender (% men) | 69.7 | 62.4 |
| 63.3 | 58.2 |
|
| BMI (kg/m2) | 27.1 ± 1.8 | 23.9 ± 1.5 |
| 26.9 ± 2.1 | 23.8 ± 1.5 |
|
| TG (mmol/L) | 2.1 ± 1.53 | 1.5 ± 0.89 |
| 1.7 ± 0.97 | 1.6 ± 0.89 | 0.390 |
| TC (mmol/L) | 5.0 ± 0.88 | 4.7 ± 0.81 | 0.027 | 4.8 ± 0.98 | 4.8 ± 0.84 | 0.674 |
| FG (mmol/L) | 5.6 ± 0.93 | 5.4 ± 1.30 | 0.289 | 6.2 ± 2.45 | 5.4 ± 1.10 |
|
| Hypertension (%) | 90.9 | 2.0 |
| 92.8 | 21.2 |
|
| Diabetes (%) | 15.2 | 3.5 | 0.115 | 13.9 | 2.7 |
|
BMI, body mass index; TG, triglycerides; TC, total cholesterol and FG, fasting glucose.
Bold numbers indicate that the differences were statistically significant between the two groups.
Allele frequency of SNPs in HS patients and controls
| Gene SNPs | Allele | ≤50 year group | >50 year group | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cases | Control |
|
| OR (95% CI) | Cases | Control |
|
| OR (95% CI) | ||
|
| |||||||||||
| rs1035798 | T | 3 (0.045) | 70 (0.137) | 37 (0.111) | 37 (0.127) | ||||||
| C | 63 (0.955) | 440 (0.863) | 4.4497 |
| 0.299 (0.091–0.979) | 295 (0.889) | 255 (0.873) | 0.3464 | 0.5562 | 0.864 (0.532–1.405) | |
|
| |||||||||||
| rs2073617 | T | 39 (0.591) | 315 (0.620) | 213 (0.645) | 187 (0.640) | ||||||
| C | 27 (0.409) | 193 (0.380) | 0.2103 | 0.6466 | 0.885 (0.525–1.492) | 117 (0.355) | 105 (0.360) | 0.0172 | 0.8958 | 1.022 (0.736–1.420)1 | |
| rs2073618 | C | 22 (0.333) | 125 (0.245) | 70 (0.211) | 80 (0.276) | ||||||
| G | 44 (0.667) | 385 (0.755) | 2.3936 | 0.1218 | 1.54 (0.888–2.670) | 262 (0.789) | 210 (0.724) | 3.5758 | 0.0586 | 0.701 (0.485–1.014) | |
|
| |||||||||||
| rs3732410 | A | 39 (0.591) | 276 (0.541) | 170 (0.512) | 164 (0.562) | ||||||
| G | 27 (0.409) | 234 (0.459) | 0.5833 | 0.445 | 1.225 (0.728–2.061) | 162 (0.488) | 128 (0.438) | 1.5362 | 0.2152 | 0.819 (0.597–1.123) | |
Bold numbers indicate that the differences were statistically significant between the two groups.
Genotype distributions of SNPs in HS patients and controls
| Gene SNPs | Genotype | ≤50 year group | >50 year group | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cases | Control |
|
| OR (95% CI) | Cases | Control |
|
| OR (95% CI) | ||
|
| |||||||||||
| rs1035798 | CC | 30 (0.909) | 190 (0.745) | 131 (0.789) | 114 (0.781) | ||||||
| TT | 0 (0.000) | 5 (0.020) | 2 (0.012) | 5 (0.034) | |||||||
| CT | 3 (0.091) | 60 (0.235) | 4.4603 | 0.1075 | 33 (0.199) | 27 (0.185) | 1.7906 | 0.4085 | |||
| TT+CT | 3 (0.091) | 65 (0.255) | 4.3568 |
| 3.421 (1.010–11.585) | 35 (0.211) | 32 (0.219) | 0.032 | 0.858 | 1.051 (0.612–1.805) | |
|
| |||||||||||
| rs2073617 | CC | 5 (0.152) | 31 (0.122) | 26 (0.158) | 13 (0.089) | ||||||
| TT | 11 (0.333) | 92 (0.362) | 74 (0.448) | 54 (0.370) | |||||||
| CT | 17 (0.515) | 131 (0.516) | 0.27 | 0.8737 | 65 (0.394) | 79 (0.541) | 7.6874 | 0.0214 | |||
| CC+CT | 22 (0.667) | 162 (0.638) | 0.1058 | 0.745 | 0.88 (0.409–1.897) | 91 (0.552) | 92 (0.630) | 1.9771 | 0.1597 | 1.385 (0.879–2.184) | |
| rs2073618 | CC | 4 (0.121) | 19 (0.075) | 9 (0.054) | 10 (0.069) | ||||||
| GG | 15 (0.455) | 149 (0.584) | 105 (0.633) | 75 (0.517) | |||||||
| CG | 14 (0.424) | 87 (0.341) | 2.2369 | 0.3268 | 52 (0.313) | 60 (0.414) | 4.2253 | 0.1209 | |||
| CC+CG | 18 (0.545) | 106 (0.416) | 2.0069 | 0.1566 | 0.593 (0.286–1.229) | 61 (0.367) | 70 (0.483) | 4.2196 |
| 1.607 (1.021–2.528) | |
|
| |||||||||||
| rs3732410 | AA | 8 (0.242) | 74 (0.290) | 45 (0.271) | 43 (0.295) | ||||||
| AG | 23 (0.697) | 128 (0.502) | 80 (0.482) | 78 (0.534) | |||||||
| GG | 2 (0.061) | 53 (0.208) | 5.6703 | 0.0587 | 41 (0.247) | 25 (0.171) | 2.6785 | 0.262 | |||
| AG+AA | 31 (0.939) | 202 (0.792) | 4.0998 |
| 0.2459 (0.057–1.060) | 125 (0.753) | 121 (0.829) | 2.6728 | 0.1021 | 1.588 (0.910–2.770) | |
Bold numbers indicate that the differences were statistically significant between the two groups.