Literature DB >> 26651756

Systematic variational method for statistical nonlinear state and parameter estimation.

Jingxin Ye1, Daniel Rey1, Nirag Kadakia1, Michael Eldridge1, Uriel I Morone1, Paul Rozdeba1, Henry D I Abarbanel2, John C Quinn3.   

Abstract

In statistical data assimilation one evaluates the conditional expected values, conditioned on measurements, of interesting quantities on the path of a model through observation and prediction windows. This often requires working with very high dimensional integrals in the discrete time descriptions of the observations and model dynamics, which become functional integrals in the continuous-time limit. Two familiar methods for performing these integrals include (1) Monte Carlo calculations and (2) variational approximations using the method of Laplace plus perturbative corrections to the dominant contributions. We attend here to aspects of the Laplace approximation and develop an annealing method for locating the variational path satisfying the Euler-Lagrange equations that comprises the major contribution to the integrals. This begins with the identification of the minimum action path starting with a situation where the model dynamics is totally unresolved in state space, and the consistent minimum of the variational problem is known. We then proceed to slowly increase the model resolution, seeking to remain in the basin of the minimum action path, until a path that gives the dominant contribution to the integral is identified. After a discussion of some general issues, we give examples of the assimilation process for some simple, instructive models from the geophysical literature. Then we explore a slightly richer model of the same type with two distinct time scales. This is followed by a model characterizing the biophysics of individual neurons.

Year:  2015        PMID: 26651756     DOI: 10.1103/PhysRevE.92.052901

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  7 in total

1.  Nonlinear statistical data assimilation for HVC[Formula: see text] neurons in the avian song system.

Authors:  Nirag Kadakia; Eve Armstrong; Daniel Breen; Uriel Morone; Arij Daou; Daniel Margoliash; Henry D I Abarbanel
Journal:  Biol Cybern       Date:  2016-09-29       Impact factor: 2.086

2.  Automatic Construction of Predictive Neuron Models through Large Scale Assimilation of Electrophysiological Data.

Authors:  Alain Nogaret; C Daniel Meliza; Daniel Margoliash; Henry D I Abarbanel
Journal:  Sci Rep       Date:  2016-09-08       Impact factor: 4.379

Review 3.  Data Assimilation Methods for Neuronal State and Parameter Estimation.

Authors:  Matthew J Moye; Casey O Diekman
Journal:  J Math Neurosci       Date:  2018-08-09       Impact factor: 1.300

4.  Identifying the measurements required to estimate rates of COVID-19 transmission, infection, and detection, using variational data assimilation.

Authors:  Eve Armstrong; Manuela Runge; Jaline Gerardin
Journal:  Infect Dis Model       Date:  2020-11-02

5.  Optimal control methods for nonlinear parameter estimation in biophysical neuron models.

Authors:  Nirag Kadakia
Journal:  PLoS Comput Biol       Date:  2022-09-15       Impact factor: 4.779

6.  Estimation of neuron parameters from imperfect observations.

Authors:  Joseph D Taylor; Samuel Winnall; Alain Nogaret
Journal:  PLoS Comput Biol       Date:  2020-07-16       Impact factor: 4.475

7.  Walking Drosophila navigate complex plumes using stochastic decisions biased by the timing of odor encounters.

Authors:  Mahmut Demir; Nirag Kadakia; Hope D Anderson; Damon A Clark; Thierry Emonet
Journal:  Elife       Date:  2020-11-03       Impact factor: 8.140

  7 in total

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