Literature DB >> 26650755

Mycobacterium tuberculosis copper-regulated protein SocB is an intrinsically disordered protein that folds upon interaction with a synthetic phospholipid bilayer.

Urszula Nowicka1, Morgan Hoffman1,2, Leah Randles1, Xiaoshan Shi3, Lyuba Khavrutskii4, Karen Stefanisko4, Nadya I Tarasova4, K Heran Darwin3, Kylie J Walters1.   

Abstract

Multiple genes in Mycobacterium tuberculosis (Mtb) are regulated by copper including socAB (small orf induced by copper A and B), which is induced by copper and repressed by RicR (regulated in copper repressor). socA and socB encode hypothetical proteins of 61 and 54 amino acids, respectively. Here, we use biophysical and computational methods to evaluate the SocB structure. We find that SocB lacks evidence for secondary structure, with no thermal cooperative unfolding event, according to circular dichroism measurements. 2D NMR spectra similarly exhibit hallmarks of a disordered structural state, which is also supported by analyzing SocB diffusion. Altogether, these findings suggest that by itself SocB is intrinsically disordered. Interestingly, SocB interacts with a synthetic phospholipid bilayer and becomes helical, which suggests that it may be membrane-associated.
© 2015 Wiley Periodicals, Inc.

Entities:  

Keywords:  Mycobacterium tuberculosis (Mtb); SocB; intrinsically disordered proteins; membrane protein; synthetic phospholipid bilayer

Mesh:

Substances:

Year:  2015        PMID: 26650755      PMCID: PMC4718776          DOI: 10.1002/prot.24970

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  26 in total

Review 1.  What does it mean to be natively unfolded?

Authors:  Vladimir N Uversky
Journal:  Eur J Biochem       Date:  2002-01

2.  Denatured collapsed states in protein folding: example of apomyoglobin.

Authors:  O Tcherkasskaya; V N Uversky
Journal:  Proteins       Date:  2001-08-15

3.  The Saccharomyces cerevisiae nucleoporin Nup2p is a natively unfolded protein.

Authors:  Daniel P Denning; Vladimir Uversky; Samir S Patel; Anthony L Fink; Michael Rexach
Journal:  J Biol Chem       Date:  2002-06-13       Impact factor: 5.157

4.  DICHROWEB, an online server for protein secondary structure analyses from circular dichroism spectroscopic data.

Authors:  Lee Whitmore; B A Wallace
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

Review 5.  Copper homeostasis in Mycobacterium tuberculosis.

Authors:  Xiaoshan Shi; K Heran Darwin
Journal:  Metallomics       Date:  2015-06       Impact factor: 4.526

6.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

7.  The proteasome of Mycobacterium tuberculosis is required for resistance to nitric oxide.

Authors:  K Heran Darwin; Sabine Ehrt; José-Carlos Gutierrez-Ramos; Nadine Weich; Carl F Nathan
Journal:  Science       Date:  2003-12-12       Impact factor: 47.728

Review 8.  Mycobacterium tuberculosis and Copper: A Newly Appreciated Defense against an Old Foe?

Authors:  K Heran Darwin
Journal:  J Biol Chem       Date:  2015-06-08       Impact factor: 5.157

9.  Directed self-assembly of monodisperse phospholipid bilayer Nanodiscs with controlled size.

Authors:  I G Denisov; Y V Grinkova; A A Lazarides; S G Sligar
Journal:  J Am Chem Soc       Date:  2004-03-24       Impact factor: 15.419

10.  JPred4: a protein secondary structure prediction server.

Authors:  Alexey Drozdetskiy; Christian Cole; James Procter; Geoffrey J Barton
Journal:  Nucleic Acids Res       Date:  2015-04-16       Impact factor: 16.971

View more
  3 in total

1.  Rpn1 provides adjacent receptor sites for substrate binding and deubiquitination by the proteasome.

Authors:  Yuan Shi; Xiang Chen; Suzanne Elsasser; Bradley B Stocks; Geng Tian; Byung-Hoon Lee; Yanhong Shi; Naixia Zhang; Stefanie A H de Poot; Fabian Tuebing; Shuangwu Sun; Jacob Vannoy; Sergey G Tarasov; John R Engen; Daniel Finley; Kylie J Walters
Journal:  Science       Date:  2016-02-19       Impact factor: 47.728

2.  The CD8α hinge is intrinsically disordered with a dynamic exchange that includes proline cis-trans isomerization.

Authors:  Xiang Chen; Justin M Mirazee; Katarzyna A Skorupka; Hiroshi Matsuo; Philippe Youkharibache; Naomi Taylor; Kylie J Walters
Journal:  J Magn Reson       Date:  2022-05-13       Impact factor: 2.734

3.  Structure of hRpn10 Bound to UBQLN2 UBL Illustrates Basis for Complementarity between Shuttle Factors and Substrates at the Proteasome.

Authors:  Xiang Chen; Danielle L Ebelle; Brandon J Wright; Vinidhra Sridharan; Evan Hooper; Kylie J Walters
Journal:  J Mol Biol       Date:  2019-01-18       Impact factor: 5.469

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.