Literature DB >> 26648831

A Novel de novo Mutation in CEACAM16 Associated with Postlingual Hearing Impairment.

Michaela A H Hofrichter1, Indrajit Nanda1, Jens Gräf1, Jörg Schröder1, Wafaa Shehata-Dieler2, Barbara Vona1, Thomas Haaf1.   

Abstract

Mutations in CEACAM16 cause autosomal dominant nonsyndromic hearing loss (DFNA4B). So far, 2 families have been reported with segregating missense mutations, both in the immunoglobulin constant domain A of the CEACAM16 protein. In this study, we used the TruSight One panel to investigate a parent-child trio without familial history of hearing loss and one affected child. When filtering for recessive inheritance and de novo events, we discovered a de novo CEACAM16 mutation (c.1094T>G, p.Leu365Arg) as the sole likely pathogenic variant. The de novo mutation was confirmed by Sanger sequencing and STR analysis. The proband's hearing loss closely matches the described onset and severity for DFNA4B. We present the third CEACAM16 variant and the first de novo mutation in CEACAM16. This de novo mutation is robustly described as a pathogenic mutation according to in silico mutation prediction tools and affects a highly conserved amino acid in the most strongly conserved CEACAM16 N2 domain. Our strategy of screening family trios enhances de novo mutation discovery and the exclusion of other variants of potential interest through pedigree filtering.

Entities:  

Keywords:  Autosomal dominant nonsyndromic hearing loss; CEACAM16; DFNA4B; De novo mutation; Next-generation sequencing; Parent-child trios

Year:  2015        PMID: 26648831      PMCID: PMC4662267          DOI: 10.1159/000439576

Source DB:  PubMed          Journal:  Mol Syndromol        ISSN: 1661-8769


  36 in total

Review 1.  De novo mutations in human genetic disease.

Authors:  Joris A Veltman; Han G Brunner
Journal:  Nat Rev Genet       Date:  2012-07-18       Impact factor: 53.242

Review 2.  Non-syndromic autosomal-dominant deafness.

Authors:  M B Petersen
Journal:  Clin Genet       Date:  2002-07       Impact factor: 4.438

3.  Noncoding mutations of HGF are associated with nonsyndromic hearing loss, DFNB39.

Authors:  Julie M Schultz; Shaheen N Khan; Zubair M Ahmed; Saima Riazuddin; Ali M Waryah; Dhananjay Chhatre; Matthew F Starost; Barbara Ploplis; Stephanie Buckley; David Velásquez; Madhulika Kabra; Kwanghyuk Lee; Muhammad J Hassan; Ghazanfar Ali; Muhammad Ansar; Manju Ghosh; Edward R Wilcox; Wasim Ahmad; Glenn Merlino; Suzanne M Leal; Sheikh Riazuddin; Thomas B Friedman; Robert J Morell
Journal:  Am J Hum Genet       Date:  2009-07-02       Impact factor: 11.025

4.  Maximum entropy modeling of short sequence motifs with applications to RNA splicing signals.

Authors:  Gene Yeo; Christopher B Burge
Journal:  J Comput Biol       Date:  2004       Impact factor: 1.479

5.  A new era in the discovery of de novo mutations underlying human genetic disease.

Authors:  Chee-Seng Ku; Vasilis Vasiliou; David N Cooper
Journal:  Hum Genomics       Date:  2012-12-12       Impact factor: 4.639

Review 6.  The Human Gene Mutation Database: building a comprehensive mutation repository for clinical and molecular genetics, diagnostic testing and personalized genomic medicine.

Authors:  Peter D Stenson; Matthew Mort; Edward V Ball; Katy Shaw; Andrew Phillips; David N Cooper
Journal:  Hum Genet       Date:  2014-01       Impact factor: 4.132

7.  Predicting the functional, molecular, and phenotypic consequences of amino acid substitutions using hidden Markov models.

Authors:  Hashem A Shihab; Julian Gough; David N Cooper; Peter D Stenson; Gary L A Barker; Keith J Edwards; Ian N M Day; Tom R Gaunt
Journal:  Hum Mutat       Date:  2012-11-02       Impact factor: 4.878

8.  Rate of de novo mutations and the importance of father's age to disease risk.

Authors:  Augustine Kong; Michael L Frigge; Gisli Masson; Soren Besenbacher; Patrick Sulem; Gisli Magnusson; Sigurjon A Gudjonsson; Asgeir Sigurdsson; Aslaug Jonasdottir; Adalbjorg Jonasdottir; Wendy S W Wong; Gunnar Sigurdsson; G Bragi Walters; Stacy Steinberg; Hannes Helgason; Gudmar Thorleifsson; Daniel F Gudbjartsson; Agnar Helgason; Olafur Th Magnusson; Unnur Thorsteinsdottir; Kari Stefansson
Journal:  Nature       Date:  2012-08-23       Impact factor: 49.962

9.  The mouse Gene Expression Database (GXD): 2014 update.

Authors:  Constance M Smith; Jacqueline H Finger; Terry F Hayamizu; Ingeborg J McCright; Jingxia Xu; Joanne Berghout; Jeff Campbell; Lori E Corbani; Kim L Forthofer; Pete J Frost; Dave Miers; David R Shaw; Kevin R Stone; Janan T Eppig; James A Kadin; Joel E Richardson; Martin Ringwald
Journal:  Nucleic Acids Res       Date:  2013-10-25       Impact factor: 16.971

10.  A framework for the interpretation of de novo mutation in human disease.

Authors:  Kaitlin E Samocha; Elise B Robinson; Stephan J Sanders; Christine Stevens; Aniko Sabo; Lauren M McGrath; Jack A Kosmicki; Karola Rehnström; Swapan Mallick; Andrew Kirby; Dennis P Wall; Daniel G MacArthur; Stacey B Gabriel; Mark DePristo; Shaun M Purcell; Aarno Palotie; Eric Boerwinkle; Joseph D Buxbaum; Edwin H Cook; Richard A Gibbs; Gerard D Schellenberg; James S Sutcliffe; Bernie Devlin; Kathryn Roeder; Benjamin M Neale; Mark J Daly
Journal:  Nat Genet       Date:  2014-08-03       Impact factor: 38.330

View more
  3 in total

1.  Further evidence for loss-of-function mutations in the CEACAM16 gene causing nonsyndromic autosomal recessive hearing loss in humans.

Authors:  Alex Marcel Moreira Dias; Karina Lezirovitz; Fernanda Stávale Nicastro; Beatriz C A Mendes; Regina Célia Mingroni-Netto
Journal:  J Hum Genet       Date:  2018-12-04       Impact factor: 3.172

2.  Old gene, new phenotype: splice-altering variants in CEACAM16 cause recessive non-syndromic hearing impairment.

Authors:  Kevin T Booth; Kimia Kahrizi; Hela Azaiez; Richard Jh Smith; Hossein Najmabadi
Journal:  J Med Genet       Date:  2018-04-27       Impact factor: 6.318

3.  A novel missense variant in CEACAM16 gene causes autosomal dominant nonsyndromic hearing loss.

Authors:  Dejun Zhang; Jie Wu; Yongyi Yuan; Xiaohong Li; Xue Gao; Mingyu Han; Song Gao; Shasha Huang; Pu Dai
Journal:  Ann Hum Genet       Date:  2022-03-16       Impact factor: 2.180

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.