Literature DB >> 26648040

In search of principles for a Theory of Organisms.

Giuseppe Longo1, Mael Montevil, Carlos Sonnenschein, Ana M Soto.   

Abstract

Lacking an operational theory to explain the organization and behaviour of matter in unicellular and multicellular organisms hinders progress in biology. Such a theory should address life cycles from ontogenesis to death. This theory would complement the theory of evolution that addresses phylogenesis, and would posit theoretical extensions to accepted physical principles and default states in order to grasp the living state of matter and define proper biological observables. Thus, we favour adopting the default state implicit in Darwin's theory, namely, cell proliferation with variation plus motility, and a framing principle, namely, life phenomena manifest themselves as non-identical iterations of morphogenetic processes. From this perspective, organisms become a consequence of the inherent variability generated by proliferation, motility and self-organization. Morphogenesis would then be the result of the default state plus physical constraints, like gravity, and those present in living organisms, like muscular tension.

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Mesh:

Year:  2015        PMID: 26648040      PMCID: PMC5505559          DOI: 10.1007/s12038-015-9574-9

Source DB:  PubMed          Journal:  J Biosci        ISSN: 0250-5991            Impact factor:   1.826


  40 in total

1.  Origins of life: Common ancestry put to the test.

Authors:  Mike Steel; David Penny
Journal:  Nature       Date:  2010-05-13       Impact factor: 49.962

2.  Myosin-dependent endoplasmic reticulum motility and F-actin organization in plant cells.

Authors:  Haruko Ueda; Etsuo Yokota; Natsumaro Kutsuna; Tomoo Shimada; Kentaro Tamura; Teruo Shimmen; Seiichiro Hasezawa; Valerian V Dolja; Ikuko Hara-Nishimura
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-29       Impact factor: 11.205

Review 3.  On the lack of specificity of proteins and its consequences for a theory of biological organization.

Authors:  Jean-Jacques Kupiec
Journal:  Prog Biophys Mol Biol       Date:  2009-11-14       Impact factor: 3.667

4.  Cytoskeletal actin networks in motile cells are critically self-organized systems synchronized by mechanical interactions.

Authors:  Luca Cardamone; Alessandro Laio; Vincent Torre; Rajesh Shahapure; Antonio DeSimone
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-08       Impact factor: 11.205

5.  Physico-genetic determinants in the evolution of development.

Authors:  Stuart A Newman
Journal:  Science       Date:  2012-10-12       Impact factor: 47.728

6.  Group behaviour in physical, chemical and biological systems.

Authors:  Cihan Saçlioğlu; Önder Pekcan; Vidyanand Nanjundiah
Journal:  J Biosci       Date:  2014-04       Impact factor: 1.826

7.  The tissue organization field theory of cancer: a testable replacement for the somatic mutation theory.

Authors:  Ana M Soto; Carlos Sonnenschein
Journal:  Bioessays       Date:  2011-05       Impact factor: 4.345

8.  Embryonic germ cells from mice and rats exhibit properties consistent with a generic pluripotent ground state.

Authors:  Harry G Leitch; Kate Blair; William Mansfield; Harold Ayetey; Peter Humphreys; Jennifer Nichols; M Azim Surani; Austin Smith
Journal:  Development       Date:  2010-06-02       Impact factor: 6.868

Review 9.  Is information a proper observable for biological organization?

Authors:  G Longo; P-A Miquel; C Sonnenschein; A M Soto
Journal:  Prog Biophys Mol Biol       Date:  2012-07-13       Impact factor: 3.667

10.  From single cells to tissues: interactions between the matrix and human breast cells in real time.

Authors:  Clifford Barnes; Lucia Speroni; Kyle P Quinn; Mael Montevil; Kurt Saetzler; Gbemisola Bode-Animashaun; George McKerr; Irene Georgakoudi; C Stephen Downes; Carlos Sonnenschein; C Vyvyan Howard; Ana M Soto
Journal:  PLoS One       Date:  2014-04-01       Impact factor: 3.240

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  18 in total

Review 1.  Why do we need theories?

Authors:  Giuseppe Longo; Ana M Soto
Journal:  Prog Biophys Mol Biol       Date:  2016-07-04       Impact factor: 3.667

Review 2.  Carcinogenesis explained within the context of a theory of organisms.

Authors:  Carlos Sonnenschein; Ana M Soto
Journal:  Prog Biophys Mol Biol       Date:  2016-08-03       Impact factor: 3.667

3.  Editorial: Centennial Celebration - An Interview With Dr Ana Soto on 25 Years of Research on Endocrine-Disrupting Chemicals.

Authors: 
Journal:  Mol Endocrinol       Date:  2016-08

4.  An Integrative Approach Toward Biology, Organisms, and Cancer.

Authors:  Carlos Sonnenschein; Ana M Soto
Journal:  Methods Mol Biol       Date:  2018

Review 5.  Toward a theory of organisms: Three founding principles in search of a useful integration.

Authors:  Ana M Soto; Giuseppe Longo; Paul-Antoine Miquel; Maël Montevil; Matteo Mossio; Nicole Perret; Arnaud Pocheville; Carlos Sonnenschein
Journal:  Prog Biophys Mol Biol       Date:  2016-08-04       Impact factor: 3.667

Review 6.  Modeling mammary organogenesis from biological first principles: Cells and their physical constraints.

Authors:  Maël Montévil; Lucia Speroni; Carlos Sonnenschein; Ana M Soto
Journal:  Prog Biophys Mol Biol       Date:  2016-08-18       Impact factor: 3.667

7.  Personalized inherent randomness of the immune system is manifested by an individualized response to immune triggers and immunomodulatory therapies: a novel platform for designing personalized immunotherapies.

Authors:  Madi El-Haj; Dimitri Kanovitch; Yaron Ilan
Journal:  Immunol Res       Date:  2019-10       Impact factor: 2.829

Review 8.  The biological default state of cell proliferation with variation and motility, a fundamental principle for a theory of organisms.

Authors:  Ana M Soto; Giuseppe Longo; Maël Montévil; Carlos Sonnenschein
Journal:  Prog Biophys Mol Biol       Date:  2016-07-02       Impact factor: 3.667

9.  A bioelectric model of carcinogenesis, including propagation of cell membrane depolarization and reversal therapies.

Authors:  Joao Carvalho
Journal:  Sci Rep       Date:  2021-06-30       Impact factor: 4.379

10.  The cancer puzzle: Welcome to organicism.

Authors:  Ana M Soto; Carlos Sonnenschein
Journal:  Prog Biophys Mol Biol       Date:  2021-07-14       Impact factor: 4.799

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