Literature DB >> 26642981

A Comparison of Barostats for the Mechanical Characterization of Metal-Organic Frameworks.

S M J Rogge1, L Vanduyfhuys1, A Ghysels1, M Waroquier1, T Verstraelen1, G Maurin2, V Van Speybroeck1.   

Abstract

In this paper, three barostat coupling schemes for pressure control, which are commonly used in molecular dynamics simulations, are critically compared to characterize the rigid MOF-5 and flexible MIL-53(Al) metal-organic frameworks. We investigate the performance of the three barostats, the Berendsen, the Martyna-Tuckerman-Tobias-Klein (MTTK), and the Langevin coupling methods, in reproducing the cell parameters and the pressure versus volume behavior in isothermal-isobaric simulations. A thermodynamic integration method is used to construct the free energy profiles as a function of volume at finite temperature. It is observed that the aforementioned static properties are well-reproduced with the three barostats. However, for static properties depending nonlinearly on the pressure, the Berendsen barostat might give deviating results as it suppresses pressure fluctuations more drastically. Finally, dynamic properties, which are directly related to the fluctuations of the cell, such as the time to transition from the large-pore to the closed-pore phase, cannot be well-reproduced by any of the coupling schemes.

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Year:  2015        PMID: 26642981     DOI: 10.1021/acs.jctc.5b00748

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  14 in total

1.  Thermodynamic Insight in the High-Pressure Behavior of UiO-66: Effect of Linker Defects and Linker Expansion.

Authors:  Sven M J Rogge; Jelle Wieme; Louis Vanduyfhuys; Steven Vandenbrande; Guillaume Maurin; Toon Verstraelen; Michel Waroquier; Veronique Van Speybroeck
Journal:  Chem Mater       Date:  2016-07-25       Impact factor: 9.811

2.  Efficient Construction of Free Energy Profiles of Breathing Metal-Organic Frameworks Using Advanced Molecular Dynamics Simulations.

Authors:  Ruben Demuynck; Sven M J Rogge; Louis Vanduyfhuys; Jelle Wieme; Michel Waroquier; Veronique Van Speybroeck
Journal:  J Chem Theory Comput       Date:  2017-12-01       Impact factor: 6.006

3.  Theoretical Investigations on Interactions of Arylsulphonyl Indazole Derivatives as Potential Ligands of VEGFR2 Kinase.

Authors:  Kornelia Czaja; Jacek Kujawski; Paweł Śliwa; Rafał Kurczab; Radosław Kujawski; Anna Stodolna; Agnieszka Myślińska; Marek K Bernard
Journal:  Int J Mol Sci       Date:  2020-07-07       Impact factor: 5.923

4.  Thermal Engineering of Metal-Organic Frameworks for Adsorption Applications: A Molecular Simulation Perspective.

Authors:  Jelle Wieme; Steven Vandenbrande; Aran Lamaire; Venkat Kapil; Louis Vanduyfhuys; Veronique Van Speybroeck
Journal:  ACS Appl Mater Interfaces       Date:  2019-10-09       Impact factor: 9.229

5.  Frustrated flexibility in metal-organic frameworks.

Authors:  Roman Pallach; Julian Keupp; Kai Terlinden; Louis Frentzel-Beyme; Marvin Kloß; Andrea Machalica; Julia Kotschy; Suresh K Vasa; Philip A Chater; Christian Sternemann; Michael T Wharmby; Rasmus Linser; Rochus Schmid; Sebastian Henke
Journal:  Nat Commun       Date:  2021-07-02       Impact factor: 14.919

6.  Reliably Modeling the Mechanical Stability of Rigid and Flexible Metal-Organic Frameworks.

Authors:  Sven M J Rogge; Michel Waroquier; Veronique Van Speybroeck
Journal:  Acc Chem Res       Date:  2017-11-20       Impact factor: 22.384

7.  Thermodynamic insight into stimuli-responsive behaviour of soft porous crystals.

Authors:  L Vanduyfhuys; S M J Rogge; J Wieme; S Vandenbrande; G Maurin; M Waroquier; V Van Speybroeck
Journal:  Nat Commun       Date:  2018-01-15       Impact factor: 14.919

8.  Extension of the QuickFF force field protocol for an improved accuracy of structural, vibrational, mechanical and thermal properties of metal-organic frameworks.

Authors:  Louis Vanduyfhuys; Steven Vandenbrande; Jelle Wieme; Michel Waroquier; Toon Verstraelen; Veronique Van Speybroeck
Journal:  J Comput Chem       Date:  2018-02-02       Impact factor: 3.376

9.  Protocol for Identifying Accurate Collective Variables in Enhanced Molecular Dynamics Simulations for the Description of Structural Transformations in Flexible Metal-Organic Frameworks.

Authors:  Ruben Demuynck; Jelle Wieme; Sven M J Rogge; Karen D Dedecker; Louis Vanduyfhuys; Michel Waroquier; Veronique Van Speybroeck
Journal:  J Chem Theory Comput       Date:  2018-11-05       Impact factor: 6.006

Review 10.  On flexible force fields for metal-organic frameworks: Recent developments and future prospects.

Authors:  Jurn Heinen; David Dubbeldam
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2018-03-25
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