Literature DB >> 26641903

A Resolution-Of-The-Identity Implementation of the Local Triatomics-In-Molecules Model for Second-Order Møller-Plesset Perturbation Theory with Application to Alanine Tetrapeptide Conformational Energies.

Robert A DiStasio1, Yousung Jung1, Martin Head-Gordon1.   

Abstract

In this work, we incorporate the resolution-of-the-identity (RI) approximation into the theoretical framework of the local triatomics-in-molecules (TRIM) second-order Møller-Plesset (MP2) perturbation theory model. The resultant model, RI-TRIM MP2, emerges as a robust fourth-order methodology that extends the regime of practical MP2 calculations. With RI-TRIM MP2, correlation energy corrections can easily be obtained for systems that contain more than 125 heavy atoms with a computational timing cost less than those of the prerequisite self-consistent field procedure and popular density functional theory (DFT) alternatives. In this work, the chemical performance of RI-TRIM MP2 is numerically assessed against untruncated RI-MP2 and DFT (B3LYP) in determining the relative energies of 27 different alanine tetrapeptide conformations at the cc-pVXZ (X = D, T, and Q) levels and the results are T → Q extrapolated to the complete basis set limit. As the quality of the basis set employed increases, we report a significant reduction in the error introduced by the RI-TRIM approximation; at the cc-pVDZ level, the root mean-square (RMS) relative error was found as 0.192 kcal/mol and is decreased to an almost negligible 0.040 kcal/mol at the T → Q extrapolated complete basis set limit. Basis set dependence was investigated by computing the RMS (max) deviations from the extrapolated RI-MP2/cc-pV(TQ)Z data set found as 0.377 (0.944) kcal/mol (MP2/cc-pVTZ) and 0.250 (0.591) kcal/mol (TRIM MP2/cc-pVTZ). These deviations are chemically significant when compared against the conformer energy differences, suggesting that to obtain reliably converged relative conformational energies, computations must be done using the cc-pVTZ and cc-pVQZ basis sets followed by extrapolation to the cc-pV(TQ)Z limit. The findings reported herein also provide the first computational evidence demonstrating that the TRIM model approaches exactness as the one-particle basis approaches completeness.

Entities:  

Year:  2005        PMID: 26641903     DOI: 10.1021/ct050126s

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  5 in total

Review 1.  Force field development phase II: Relaxation of physics-based criteria… or inclusion of more rigorous physics into the representation of molecular energetics.

Authors:  A T Hagler
Journal:  J Comput Aided Mol Des       Date:  2018-11-30       Impact factor: 3.686

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Authors:  Jay W Ponder; Chuanjie Wu; Pengyu Ren; Vijay S Pande; John D Chodera; Michael J Schnieders; Imran Haque; David L Mobley; Daniel S Lambrecht; Robert A DiStasio; Martin Head-Gordon; Gary N I Clark; Margaret E Johnson; Teresa Head-Gordon
Journal:  J Phys Chem B       Date:  2010-03-04       Impact factor: 2.991

3.  The Polarizable Atomic Multipole-based AMOEBA Force Field for Proteins.

Authors:  Yue Shi; Zhen Xia; Jiajing Zhang; Robert Best; Chuanjie Wu; Jay W Ponder; Pengyu Ren
Journal:  J Chem Theory Comput       Date:  2013       Impact factor: 6.006

4.  Improved Peptide and Protein Torsional Energetics with the OPLSAA Force Field.

Authors:  Michael J Robertson; Julian Tirado-Rives; William L Jorgensen
Journal:  J Chem Theory Comput       Date:  2015-07-14       Impact factor: 6.006

5.  Capturing Many-Body Interactions with Classical Dipole Induction Models.

Authors:  Chengwen Liu; Rui Qi; Qiantao Wang; J-P Piquemal; Pengyu Ren
Journal:  J Chem Theory Comput       Date:  2017-05-12       Impact factor: 6.006

  5 in total

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