Literature DB >> 26641138

The complete chloroplast genome sequences of Iris sanguinea donn ex Hornem.

Hyun-Jung Lee1, Gi-Heum Nam1, Kyunghee Kim2,3, Chae Eun Lim1, Joo-Hong Yeo1, Soonok Kim1.   

Abstract

The complete chloroplast genome of Iris sanguinea was sequenced newly in this study. The total chloroplast genome size of I. sanguinea was 152 408 bp, its structure and gene contents were well conserved as typical chloroplast characteristics. Large single copy (LSC) and small single copy (SSC) of 82 340 bp and 18 016 bp, respectively, were separated from a pair of inverted repeats (IRA and IRB) of 26 026 bp. A total of 112 genes, i.e. 78 protein-coding genes, 30 tRNA genes, and four rRNA genes, were encoded in the chloroplast genome of I. sanguinea. Overall GC content of I. sanguinea was 36.83%. Phylogenetic analysis with the reported chloroplast genomes revealed that I. sanguinea is most closely related to I. gatesii.

Entities:  

Keywords:  Chloroplast genome; Iris sanguinea; next-generation sequencing

Mesh:

Substances:

Year:  2015        PMID: 26641138     DOI: 10.3109/19401736.2015.1106521

Source DB:  PubMed          Journal:  Mitochondrial DNA A DNA Mapp Seq Anal        ISSN: 2470-1394            Impact factor:   1.514


  5 in total

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Journal:  Sci Rep       Date:  2022-06-08       Impact factor: 4.996

2.  Comparison Analysis Based on Complete Chloroplast Genomes and Insights into Plastid Phylogenomic of Four Iris Species.

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Journal:  Biomed Res Int       Date:  2022-07-27       Impact factor: 3.246

3.  Genome skimming approach reveals the gene arrangements in the chloroplast genomes of the highly endangered Crocus L. species: Crocus istanbulensis (B.Mathew) Rukšāns.

Authors:  Selahattin Baris Cay; Yusuf Ulas Cinar; Selim Can Kuralay; Behcet Inal; Gokmen Zararsiz; Almila Ciftci; Rachel Mollman; Onur Obut; Vahap Eldem; Yakup Bakir; Osman Erol
Journal:  PLoS One       Date:  2022-06-15       Impact factor: 3.752

4.  The chloroplast genome of the Iris japonica Thunberg (Butterfly flower) reveals the genomic and evolutionary characteristics of Iris species.

Authors:  Xinyi Zhang; Heyu Yang; Bin Wu; Haimei Chen
Journal:  Mitochondrial DNA B Resour       Date:  2022-10-11       Impact factor: 0.610

5.  Identification of plastid genomic regions inferring species identity from de novo plastid genome assembly of 14 Korean-native Iris species (Iridaceae).

Authors:  Yang Jae Kang; Soonok Kim; Jungho Lee; Hyosig Won; Gi-Heum Nam; Myounghai Kwak
Journal:  PLoS One       Date:  2020-10-26       Impact factor: 3.240

  5 in total

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