Literature DB >> 26641117

Benchmarking the Conductor-like Polarizable Continuum Model (CPCM) for Aqueous Solvation Free Energies of Neutral and Ionic Organic Molecules.

Yu Takano1, K N Houk1.   

Abstract

The conductor-like polarizable continuum model (CPCM) using several cavity models is applied to compute aqueous solvation free energies for a number of organic molecules (30 neutral molecules, 21 anions, and 19 cations). The calculated solvation free energies are compared to the available experimental data from the viewpoint of cavity models, computational methods, calculation time, and aqueous pKa values. The HF/6-31+G(d)//HF/6-31+G(d) and the HF/6-31+G(d)//B3LYP/6-31+G(d) with the UAKS cavities, in which radii are optimized with PBE0/6-31G(d), provide aqueous solvation effects in best agreement with available experimental data. The mean absolute deviations from experiment are 2.6 kcal/mol. The MP2/6-31++G(d,p)//HF/6-31+G(d) with the CPCM-UAKS(HF/6-31+G(d)) calculation is also performed for the base-catalyzed hydrolysis of methyl acetate in water.

Entities:  

Year:  2005        PMID: 26641117     DOI: 10.1021/ct049977a

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  97 in total

1.  Differential geometry based solvation model II: Lagrangian formulation.

Authors:  Zhan Chen; Nathan A Baker; G W Wei
Journal:  J Math Biol       Date:  2011-01-30       Impact factor: 2.259

2.  Differential geometry based solvation model. III. Quantum formulation.

Authors:  Zhan Chen; Guo-Wei Wei
Journal:  J Chem Phys       Date:  2011-11-21       Impact factor: 3.488

3.  Theoretical studies on the reaction of mono- and ditriflate derivatives of 1,4:3,6-dianhydro-D-mannitol with trimethylamine--Can a quaternary ammonium salt be a source of the methyl group?

Authors:  Justyna Bednarko; Justyna Wielińska; Karol Sikora; Beata Liberek; Andrzej Nowacki
Journal:  J Comput Aided Mol Des       Date:  2015-12-14       Impact factor: 3.686

4.  Homodimers of cytosine and 1-methylcytosine. A DFT study of geometry, relative stability and H-NMR shifts in gas-phase and selected solvents.

Authors:  Guvanchmyrat Paytakov; Leonid Gorb; Andriy Stepanyugin; Svitlana Samiylenko; Dmytro Hovorun; Jerzy Leszczynski
Journal:  J Mol Model       Date:  2014-02-20       Impact factor: 1.810

5.  A molecular dynamics investigation of lipid bilayer perturbation by PIP2.

Authors:  Dmitry Lupyan; Mihaly Mezei; Diomedes E Logothetis; Roman Osman
Journal:  Biophys J       Date:  2010-01-20       Impact factor: 4.033

6.  A theoretical study of cyclohexyne addition to carbonyl-Cα bonds: allowed and forbidden electrocyclic and nonpericyclic ring-openings of strained cyclobutenes.

Authors:  C Avery Sader; K N Houk
Journal:  J Org Chem       Date:  2012-05-11       Impact factor: 4.354

7.  Origins of stereoselectivity in Diels-Alder cycloadditions catalyzed by chiral imidazolidinones.

Authors:  Ruth Gordillo; K N Houk
Journal:  J Am Chem Soc       Date:  2006-03-22       Impact factor: 15.419

8.  How accurate are continuum solvation models for drug-like molecules?

Authors:  Jacob Kongsted; Pär Söderhjelm; Ulf Ryde
Journal:  J Comput Aided Mol Des       Date:  2009-05-15       Impact factor: 3.686

9.  Controlling Selectivity for Cycloadditions of Nitrones and Alkenes Tethered by Benzimidazoles: Combining Experiment and Theory.

Authors:  Liping Meng; Selina C Wang; James C Fettinger; Mark J Kurth; Dean J Tantillo
Journal:  European J Org Chem       Date:  2009-04

10.  Theoretical studies on the stability, detonation performance and possibility of synthesis of the nitro derivatives of epoxyethane.

Authors:  Xueli Zhang; Xuedong Gong
Journal:  J Mol Model       Date:  2014-08-05       Impact factor: 1.810

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