Literature DB >> 26640310

A Sequential Algorithm for Multiblock Orthogonal Projections to Latent Structures.

Bradley Worley1, Robert Powers1.   

Abstract

Methods of multiblock bilinear factorizations have increased in popularity in chemistry and biology as recent increases in the availability of information-rich spectroscopic platforms has made collecting multiple spectroscopic observations per sample a practicable possibility. Of the existing multiblock methods, consensus PCA (CPCA-W) and multiblock PLS (MB-PLS) have been shown to bear desirable qualities for multivariate modeling, most notably their computability from single-block PCA and PLS factorizations. While MB-PLS is a powerful extension to the nonlinear iterative partial least squares (NIPALS) framework, it still spreads predictive information across multiple components when response-uncorrelated variation exists in the data. The OnPLS extension to O2PLS provides a means of simultaneously extracting predictive and uncorrelated variation from a set of matrices, but is more suited to unsupervised data discovery than regression. We describe the union of NIPALS MB-PLS with an orthogonal signal correction (OSC) filter, called MB-OPLS, and illustrate its equivalence to single-block OPLS for regression and discriminant analysis.

Entities:  

Keywords:  CPCA-W; MB-OPLS; MB-PLS; Multiblock data; OnPLS

Year:  2015        PMID: 26640310      PMCID: PMC4668594          DOI: 10.1016/j.chemolab.2015.10.018

Source DB:  PubMed          Journal:  Chemometr Intell Lab Syst        ISSN: 0169-7439            Impact factor:   3.491


  10 in total

1.  Visualization of GC/TOF-MS-based metabolomics data for identification of biochemically interesting compounds using OPLS class models.

Authors:  Susanne Wiklund; Erik Johansson; Lina Sjöström; Ewa J Mellerowicz; Ulf Edlund; John P Shockcor; Johan Gottfries; Thomas Moritz; Johan Trygg
Journal:  Anal Chem       Date:  2007-11-21       Impact factor: 6.986

2.  Global, local and unique decompositions in OnPLS for multiblock data analysis.

Authors:  Tommy Löfstedt; Daniel Hoffman; Johan Trygg
Journal:  Anal Chim Acta       Date:  2013-06-26       Impact factor: 6.558

3.  OPLS in batch monitoring - Opens up new opportunities.

Authors:  Nabil Souihi; Anders Lindegren; Lennart Eriksson; Johan Trygg
Journal:  Anal Chim Acta       Date:  2014-12-05       Impact factor: 6.558

4.  Quantitative structure-activity relationship of organophosphate compounds based on molecular interaction fields descriptors.

Authors:  Jinsong Zhao; Shuxia Yu
Journal:  Environ Toxicol Pharmacol       Date:  2012-12-21       Impact factor: 4.860

5.  Integrating multiple analytical platforms and chemometrics for comprehensive metabolic profiling: application to meat spoilage detection.

Authors:  Yun Xu; Elon Correa; Royston Goodacre
Journal:  Anal Bioanal Chem       Date:  2013-03-20       Impact factor: 4.142

6.  Combining DI-ESI-MS and NMR datasets for metabolic profiling.

Authors:  Darrell D Marshall; Shulei Lei; Bradley Worley; Yuting Huang; Aracely Garcia-Garcia; Rodrigo Franco; Eric D Dodds; Robert Powers
Journal:  Metabolomics       Date:  2015-04       Impact factor: 4.290

7.  A multiblock PLS model of cortico-cortical and corticomuscular interactions in Parkinson's disease.

Authors:  Joyce Chiang; Z Jane Wang; Martin J McKeown
Journal:  Neuroimage       Date:  2012-08-15       Impact factor: 6.556

8.  Infant growth patterns of the mandible in modern humans: a closer exploration of the developmental interactions between the symphyseal bone, the teeth, and the suprahyoid and tongue muscle insertion sites.

Authors:  Michael Coquerelle; Juan Carlos Prados-Frutos; Stefano Benazzi; Fred L Bookstein; Sascha Senck; Philipp Mitteroecker; Gerhard W Weber
Journal:  J Anat       Date:  2012-11-08       Impact factor: 2.610

9.  MVAPACK: a complete data handling package for NMR metabolomics.

Authors:  Bradley Worley; Robert Powers
Journal:  ACS Chem Biol       Date:  2014-03-07       Impact factor: 5.100

10.  Alterations in energy/redox metabolism induced by mitochondrial and environmental toxins: a specific role for glucose-6-phosphate-dehydrogenase and the pentose phosphate pathway in paraquat toxicity.

Authors:  Shulei Lei; Laura Zavala-Flores; Aracely Garcia-Garcia; Renu Nandakumar; Yuting Huang; Nandakumar Madayiputhiya; Robert C Stanton; Eric D Dodds; Robert Powers; Rodrigo Franco
Journal:  ACS Chem Biol       Date:  2014-07-07       Impact factor: 5.100

  10 in total
  5 in total

Review 1.  Beyond the paradigm: Combining mass spectrometry and nuclear magnetic resonance for metabolomics.

Authors:  Darrell D Marshall; Robert Powers
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2017-01-11       Impact factor: 9.795

Review 2.  Heterogeneous data integration methods for patient similarity networks.

Authors:  Jessica Gliozzo; Marco Mesiti; Marco Notaro; Alessandro Petrini; Alex Patak; Antonio Puertas-Gallardo; Alberto Paccanaro; Giorgio Valentini; Elena Casiraghi
Journal:  Brief Bioinform       Date:  2022-07-18       Impact factor: 13.994

Review 3.  Metabolic Investigations of the Molecular Mechanisms Associated with Parkinson's Disease.

Authors:  Robert Powers; Shulei Lei; Annadurai Anandhan; Darrell D Marshall; Bradley Worley; Ronald L Cerny; Eric D Dodds; Yuting Huang; Mihalis I Panayiotidis; Aglaia Pappa; Rodrigo Franco
Journal:  Metabolites       Date:  2017-05-24

4.  Understanding the response to endurance exercise using a systems biology approach: combining blood metabolomics, transcriptomics and miRNomics in horses.

Authors:  Núria Mach; Yuliaxis Ramayo-Caldas; Allison Clark; Marco Moroldo; Céline Robert; Eric Barrey; Jesús Maria López; Laurence Le Moyec
Journal:  BMC Genomics       Date:  2017-02-17       Impact factor: 3.969

Review 5.  Deciphering the Retinal Epigenome during Development, Disease and Reprogramming: Advancements, Challenges and Perspectives.

Authors:  Cristina Zibetti
Journal:  Cells       Date:  2022-02-25       Impact factor: 6.600

  5 in total

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