Literature DB >> 26638075

A Dynamic Protein Interaction Landscape of the Human Centrosome-Cilium Interface.

Gagan D Gupta1, Étienne Coyaud2, João Gonçalves1, Bahareh A Mojarad3, Yi Liu3, Qianzhu Wu3, Ladan Gheiratmand1, David Comartin3, Johnny M Tkach1, Sally W T Cheung1, Mikhail Bashkurov1, Monica Hasegan1, James D Knight1, Zhen-Yuan Lin1, Markus Schueler4, Friedhelm Hildebrandt4, Jason Moffat5, Anne-Claude Gingras3, Brian Raught6, Laurence Pelletier7.   

Abstract

The centrosome is the primary microtubule organizing center of the cells and templates the formation of cilia, thereby operating at a nexus of critical cellular functions. Here, we use proximity-dependent biotinylation (BioID) to map the centrosome-cilium interface; with 58 bait proteins we generate a protein topology network comprising >7,000 interactions. Analysis of interaction profiles coupled with high resolution phenotypic profiling implicates a number of protein modules in centriole duplication, ciliogenesis, and centriolar satellite biogenesis and highlights extensive interplay between these processes. By monitoring dynamic changes in the centrosome-cilium protein interaction landscape during ciliogenesis, we also identify satellite proteins that support cilia formation. Systematic profiling of proximity interactions combined with functional analysis thus provides a rich resource for better understanding human centrosome and cilia biology. Similar strategies may be applied to other complex biological structures or pathways.
Copyright © 2015 Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 26638075      PMCID: PMC5089374          DOI: 10.1016/j.cell.2015.10.065

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  45 in total

1.  Tubulin polyglutamylase enzymes are members of the TTL domain protein family.

Authors:  Carsten Janke; Krzysztof Rogowski; Dorota Wloga; Catherine Regnard; Andrey V Kajava; Jean-Marc Strub; Nevzat Temurak; Juliette van Dijk; Dominique Boucher; Alain van Dorsselaer; Swati Suryavanshi; Jacek Gaertig; Bernard Eddé
Journal:  Science       Date:  2005-05-12       Impact factor: 47.728

2.  Novel asymmetrically localizing components of human centrosomes identified by complementary proteomics methods.

Authors:  Lis Jakobsen; Katja Vanselow; Marie Skogs; Yusuke Toyoda; Emma Lundberg; Ina Poser; Lasse G Falkenby; Martin Bennetzen; Jens Westendorf; Erich A Nigg; Mathias Uhlen; Anthony A Hyman; Jens S Andersen
Journal:  EMBO J       Date:  2011-03-11       Impact factor: 11.598

3.  Cep97 and CP110 suppress a cilia assembly program.

Authors:  Alexander Spektor; William Y Tsang; David Khoo; Brian David Dynlacht
Journal:  Cell       Date:  2007-08-24       Impact factor: 41.582

4.  Ahi1, whose human ortholog is mutated in Joubert syndrome, is required for Rab8a localization, ciliogenesis and vesicle trafficking.

Authors:  Yi-Chun Hsiao; Zachary J Tong; Jennifer E Westfall; Jeffrey G Ault; Patrick S Page-McCaw; Russell J Ferland
Journal:  Hum Mol Genet       Date:  2009-07-22       Impact factor: 6.150

5.  Centriole distal appendages promote membrane docking, leading to cilia initiation.

Authors:  Barbara E Tanos; Hui-Ju Yang; Rajesh Soni; Won-Jing Wang; Frank P Macaluso; John M Asara; Meng-Fu Bryan Tsou
Journal:  Genes Dev       Date:  2013-01-15       Impact factor: 11.361

6.  Functional genomic screen for modulators of ciliogenesis and cilium length.

Authors:  Joon Kim; Ji Eun Lee; Susanne Heynen-Genel; Eigo Suyama; Keiichiro Ono; Kiyoung Lee; Trey Ideker; Pedro Aza-Blanc; Joseph G Gleeson
Journal:  Nature       Date:  2010-04-15       Impact factor: 49.962

7.  A primary microcephaly protein complex forms a ring around parental centrioles.

Authors:  Joo-Hee Sir; Alexis R Barr; Adeline K Nicholas; Ofelia P Carvalho; Maryam Khurshid; Alex Sossick; Stefanie Reichelt; Clive D'Santos; C Geoffrey Woods; Fanni Gergely
Journal:  Nat Genet       Date:  2011-10-09       Impact factor: 38.330

8.  A promiscuous biotin ligase fusion protein identifies proximal and interacting proteins in mammalian cells.

Authors:  Kyle J Roux; Dae In Kim; Manfred Raida; Brian Burke
Journal:  J Cell Biol       Date:  2012-03-12       Impact factor: 10.539

9.  Proximity biotinylation and affinity purification are complementary approaches for the interactome mapping of chromatin-associated protein complexes.

Authors:  Jean-Philippe Lambert; Monika Tucholska; Christopher Go; James D R Knight; Anne-Claude Gingras
Journal:  J Proteomics       Date:  2014-10-02       Impact factor: 4.044

10.  SAINTexpress: improvements and additional features in Significance Analysis of INTeractome software.

Authors:  Guoci Teo; Guomin Liu; Jianping Zhang; Alexey I Nesvizhskii; Anne-Claude Gingras; Hyungwon Choi
Journal:  J Proteomics       Date:  2013-10-26       Impact factor: 4.044

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  203 in total

1.  BioID screening of biotinylation sites using the avidin-like protein Tamavidin 2-REV identifies global interactors of stimulator of interferon genes (STING).

Authors:  Kou Motani; Hidetaka Kosako
Journal:  J Biol Chem       Date:  2020-06-17       Impact factor: 5.157

2.  LUZP1, a novel regulator of primary cilia and the actin cytoskeleton, is a contributing factor in Townes-Brocks Syndrome.

Authors:  Laura Bozal-Basterra; María Gonzalez-Santamarta; Veronica Muratore; Aitor Bermejo-Arteagabeitia; Carolina Da Fonseca; Orhi Barroso-Gomila; Mikel Azkargorta; Ibon Iloro; Olatz Pampliega; Ricardo Andrade; Natalia Martín-Martín; Tess C Branon; Alice Y Ting; Jose A Rodríguez; Arkaitz Carracedo; Felix Elortza; James D Sutherland; Rosa Barrio
Journal:  Elife       Date:  2020-06-18       Impact factor: 8.140

3.  Mutations in MAPKBP1 Cause Juvenile or Late-Onset Cilia-Independent Nephronophthisis.

Authors:  Maxence S Macia; Jan Halbritter; Marion Delous; Cecilie Bredrup; Arthur Gutter; Emilie Filhol; Anne E C Mellgren; Sabine Leh; Albane Bizet; Daniela A Braun; Heon Y Gee; Flora Silbermann; Charline Henry; Pauline Krug; Christine Bole-Feysot; Patrick Nitschké; Dominique Joly; Philippe Nicoud; André Paget; Heidi Haugland; Damien Brackmann; Nayir Ahmet; Richard Sandford; Nurcan Cengiz; Per M Knappskog; Helge Boman; Bolan Linghu; Fan Yang; Edward J Oakeley; Pierre Saint Mézard; Andreas W Sailer; Stefan Johansson; Eyvind Rødahl; Sophie Saunier; Friedhelm Hildebrandt; Alexandre Benmerah
Journal:  Am J Hum Genet       Date:  2017-01-12       Impact factor: 11.025

4.  PLK4 deubiquitination by Spata2-CYLD suppresses NEK7-mediated NLRP3 inflammasome activation at the centrosome.

Authors:  Xiao-Dong Yang; Wenguo Li; Shuangyan Zhang; Dandan Wu; Xiaoli Jiang; Rong Tan; Xiaoyin Niu; Qijun Wang; Xuefeng Wu; Zhiduo Liu; Lin-Feng Chen; Jun Qin; Bing Su
Journal:  EMBO J       Date:  2019-11-25       Impact factor: 11.598

Review 5.  Cilium assembly and disassembly.

Authors:  Irma Sánchez; Brian David Dynlacht
Journal:  Nat Cell Biol       Date:  2016-06-28       Impact factor: 28.824

6.  The centriolar satellite protein CCDC66 interacts with CEP290 and functions in cilium formation and trafficking.

Authors:  Deniz Conkar; Efraim Culfa; Ezgi Odabasi; Navin Rauniyar; John R Yates; Elif N Firat-Karalar
Journal:  J Cell Sci       Date:  2017-02-24       Impact factor: 5.285

7.  Global Interactomics Uncovers Extensive Organellar Targeting by Zika Virus.

Authors:  Etienne Coyaud; Charlene Ranadheera; Derrick Cheng; João Gonçalves; Boris J A Dyakov; Estelle M N Laurent; Jonathan St-Germain; Laurence Pelletier; Anne-Claude Gingras; John H Brumell; Peter K Kim; David Safronetz; Brian Raught
Journal:  Mol Cell Proteomics       Date:  2018-07-23       Impact factor: 5.911

Review 8.  Mechanism and Regulation of Centriole and Cilium Biogenesis.

Authors:  David K Breslow; Andrew J Holland
Journal:  Annu Rev Biochem       Date:  2019-01-11       Impact factor: 23.643

Review 9.  Filling the Void: Proximity-Based Labeling of Proteins in Living Cells.

Authors:  Dae In Kim; Kyle J Roux
Journal:  Trends Cell Biol       Date:  2016-09-22       Impact factor: 20.808

10.  FAM105A/OTULINL Is a Pseudodeubiquitinase of the OTU-Class that Localizes to the ER Membrane.

Authors:  Derek F Ceccarelli; Sofiia Ivantsiv; Amber Anne Mullin; Etienne Coyaud; Noah Manczyk; Pierre Maisonneuve; Igor Kurinov; Liang Zhao; Chris Go; Anne-Claude Gingras; Brian Raught; Sabine Cordes; Frank Sicheri
Journal:  Structure       Date:  2019-05-02       Impact factor: 5.006

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