Literature DB >> 26636367

A Potential Energy Function for Heterogeneous Proton-Wires. Ground and Photoactive States of the Proton-Wire in the Green Fluorescent Protein.

Oriol Vendrell1,2, Ricard Gelabert1,2, Miquel Moreno1,2, José M Lluch1,2.   

Abstract

In this paper an EVB-based method to describe the energetics of operation of arbitrary-length heterogeneous proton-wires is described. The method keeps the number of fittable parameters low by exploiting the idea of "protonation states". The method is applied to describe the 3-proton proton-wire described in Green Fluorescent Protein (GFP), and two sets of parameters have been obtained, one for the electronic ground state and another for the photoactive excited electronic state, of a chemical model including the groups supporting the proton-wire and based on CASPT2//CASSCF quality reference energies. The fitted EVB functions are analyzed in static terms. In this way, it is seen that only a minimum exists in S0 while two exist in S1: one for the photoproduct and one for the reactant in the excited state, even though consideration of the Franck-Condon excitation energy predicts an effective barrier under 1 kcal mol(-1). Topological analysis of the transition state structure reveals a concerted but asynchronous motion of the protons, where the chromophore's proton lags behind, and the final proton of the wire that goes from Ser205 to Glu222 leads the process. Inclusion of nuclear dynamic efects causes this small effective barrier to vanish and predicts an essentially barrierless process in the excited state.

Entities:  

Year:  2008        PMID: 26636367     DOI: 10.1021/ct800075w

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  6 in total

1.  Wide-dynamic-range kinetic investigations of deep proton tunnelling in proteins.

Authors:  Bridget Salna; Abdelkrim Benabbas; J Timothy Sage; Jasper van Thor; Paul M Champion
Journal:  Nat Chem       Date:  2016-05-30       Impact factor: 24.427

2.  Computer modeling of the structure and spectra of fluorescent proteins.

Authors:  A V Nemukhin; B L Grigorenko; A P Savitsky
Journal:  Acta Naturae       Date:  2009-07       Impact factor: 1.845

3.  Complete Proton Transfer Cycle in GFP and Its T203V and S205V Mutants.

Authors:  Sergey P Laptenok; Andras Lukacs; Agnieszka Gil; Richard Brust; Igor V Sazanovich; Gregory M Greetham; Peter J Tonge; Stephen R Meech
Journal:  Angew Chem Int Ed Engl       Date:  2015-06-18       Impact factor: 15.336

4.  Photoacid Behaviour in a Fluorinated Green Fluorescent Protein Chromophore: Ultrafast Formation of Anion and Zwitterion States..

Authors:  S P Laptenok; J Conyard; P C Bulman Page; Y Chan; M You; S R Jaffrey; S R Meech
Journal:  Chem Sci       Date:  2016-06-06       Impact factor: 9.825

5.  The mechanism of a green fluorescent protein proton shuttle unveiled in the time-resolved frequency domain by excited state ab initio dynamics.

Authors:  Greta Donati; Alessio Petrone; Pasquale Caruso; Nadia Rega
Journal:  Chem Sci       Date:  2018-01-02       Impact factor: 9.825

6.  A Not Obvious Correlation Between the Structure of Green Fluorescent Protein Chromophore Pocket and Hydrogen Bond Dynamics: A Choreography From ab initio Molecular Dynamics.

Authors:  Federico Coppola; Fulvio Perrella; Alessio Petrone; Greta Donati; Nadia Rega
Journal:  Front Mol Biosci       Date:  2020-10-27
  6 in total

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