Literature DB >> 26634732

Structure refinement using precession electron diffraction tomography and dynamical diffraction: tests on experimental data.

Lukáš Palatinus1, Cinthia Antunes Corrêa1, Gwladys Steciuk2, Damien Jacob3, Pascal Roussel4, Philippe Boullay2, Mariana Klementová1, Mauro Gemmi5, Jaromír Kopeček1, M Chiara Domeneghetti6, Fernando Cámara7, Václav Petříček1.   

Abstract

The recently published method for the structure refinement from three-dimensional precession electron diffraction data using dynamical diffraction theory [Palatinus et al. (2015). Acta Cryst. A71, 235-244] has been applied to a set of experimental data sets from five different samples - Ni2Si, PrVO3, kaolinite, orthopyroxene and mayenite. The data were measured on different instruments and with variable precession angles. For each sample a reliable reference structure was available. A large series of tests revealed that the method provides structure models with an average error in atomic positions typically between 0.01 and 0.02 Å. The obtained structure models are significantly more accurate than models obtained by refinement using kinematical approximation for the calculation of model intensities. The method also allows a reliable determination of site occupancies and determination of absolute structure. Based on the extensive tests, an optimal set of the parameters for the method is proposed.

Entities:  

Keywords:  dynamical diffraction; electron crystallography; electron diffraction tomography; kaolinite; mayenite; orthopyroxene; precession

Year:  2015        PMID: 26634732     DOI: 10.1107/S2052520615017023

Source DB:  PubMed          Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater        ISSN: 2052-5192


  21 in total

Review 1.  Electron Diffraction of 3D Molecular Crystals.

Authors:  Ambarneil Saha; Shervin S Nia; José A Rodríguez
Journal:  Chem Rev       Date:  2022-08-15       Impact factor: 72.087

2.  Experimental Phasing of MicroED Data Using Radiation Damage.

Authors:  Michael W Martynowycz; Johan Hattne; Tamir Gonen
Journal:  Structure       Date:  2020-02-04       Impact factor: 5.006

3.  A new electron diffraction approach for structure refinement applied to Ca3Mn2O7.

Authors:  R Beanland; K Smith; P Vaněk; H Zhang; A Hubert; K Evans; R A Römer; S Kamba
Journal:  Acta Crystallogr A Found Adv       Date:  2021-03-17       Impact factor: 2.290

4.  (Na,□)5[MnO2]13 nanorods: a new tunnel structure for electrode materials determined ab initio and refined through a combination of electron and synchrotron diffraction data.

Authors:  Enrico Mugnaioli; Mauro Gemmi; Marco Merlini; Michele Gregorkiewitz
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2016-12-01

5.  Protein structure determination by electron diffraction using a single three-dimensional nanocrystal.

Authors:  M T B Clabbers; E van Genderen; W Wan; E L Wiegers; T Gruene; J P Abrahams
Journal:  Acta Crystallogr D Struct Biol       Date:  2017-08-15       Impact factor: 7.652

6.  Stacking sequence variations in vaterite resolved by precession electron diffraction tomography using a unified superspace model.

Authors:  Gwladys Steciuk; Lukáš Palatinus; Jan Rohlíček; Salim Ouhenia; Daniel Chateigner
Journal:  Sci Rep       Date:  2019-06-24       Impact factor: 4.379

Review 7.  3D Electron Diffraction: The Nanocrystallography Revolution.

Authors:  Mauro Gemmi; Enrico Mugnaioli; Tatiana E Gorelik; Ute Kolb; Lukas Palatinus; Philippe Boullay; Sven Hovmöller; Jan Pieter Abrahams
Journal:  ACS Cent Sci       Date:  2019-07-19       Impact factor: 14.553

8.  Garnet, the archetypal cubic mineral, grows tetragonal.

Authors:  B Cesare; F Nestola; T Johnson; E Mugnaioli; G Della Ventura; L Peruzzo; O Bartoli; C Viti; T Erickson
Journal:  Sci Rep       Date:  2019-10-11       Impact factor: 4.379

9.  Refinement of organic crystal structures with multipolar electron scattering factors.

Authors:  Barbara Gruza; Michał Leszek Chodkiewicz; Joanna Krzeszczakowska; Paulina Maria Dominiak
Journal:  Acta Crystallogr A Found Adv       Date:  2020-01-01       Impact factor: 2.290

10.  A high-strength silicide phase in a stainless steel alloy designed for wear-resistant applications.

Authors:  D Bowden; Y Krysiak; L Palatinus; D Tsivoulas; S Plana-Ruiz; E Sarakinou; U Kolb; D Stewart; M Preuss
Journal:  Nat Commun       Date:  2018-04-10       Impact factor: 14.919

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