Literature DB >> 26633230

Toward the Prediction of Organic Hydrate Crystal Structures.

Ashley T Hulme1, Sarah L Price1.   

Abstract

Lattice energy minimization studies on four ordered crystal structures of ice and 22 hydrates of approximately rigid organic molecules (along with 11 corresponding anhydrate structures) were used to establish a model potential scheme, based on the use of a distributed multipole electrostatic model, that can reasonably reproduce the crystal structures. Transferring the empirical repulsion-dispersion potentials for organic oxygen and polar hydrogen atoms to water appears more successful for modeling ice phases than using common water potentials derived from liquid properties. Lattice energy differences are reasonable but quite sensitive to the exact conformation of water and the organic molecule used in the rigid molecule modeling. This potential scheme was used to test a new approach of predicting the crystal structure of 5-azauracil monohydrate (an isolated site hydrate) based on seeking dense crystal packings of 66 5-azauracil···water hydrogen-bonded clusters, derived from an analysis of hydrate hydrogen bond geometries involving the carbonyl- and aza-group acceptors in the Cambridge Structural Database. The known structure was found within 5 kJ mol(-1) of the global minimum in static lattice energy and as the third most stable structure, within 1 kJ mol(-1), when thermal effects at ambient temperature were considered. Thus, although the computational prediction of whether an organic molecule will crystallize in a hydrated form poses many challenges, the prediction of plausible structures for hydrogen-bonded monohydrates is now possible.

Entities:  

Year:  2007        PMID: 26633230     DOI: 10.1021/ct700045r

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  2 in total

1.  Which, if any, hydrates will crystallise? Predicting hydrate formation of two dihydroxybenzoic acids.

Authors:  Doris E Braun; Panagiotis G Karamertzanis; Sarah L Price
Journal:  Chem Commun (Camb)       Date:  2011-04-08       Impact factor: 6.222

2.  Towards an understanding of the propensity for crystalline hydrate formation by molecular compounds.

Authors:  Alankriti Bajpai; Hayley S Scott; Tony Pham; Kai-Jie Chen; Brian Space; Matteo Lusi; Miranda L Perry; Michael J Zaworotko
Journal:  IUCrJ       Date:  2016-10-18       Impact factor: 4.769

  2 in total

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