| Literature DB >> 26629702 |
Nina Marn1, Tin Klanjscek1, Lesley Stokes2, Marko Jusup3.
Abstract
INTRODUCTION: Sea turtles face threats globally and are protected by national and international laws. Allometry and scaling models greatly aid sea turtle conservation and research, and help to better understand the biology of sea turtles. Scaling, however, may differ between regions and/or life stages. We analyze differences between (i) two different regional subsets and (ii) three different life stage subsets of the western North Atlantic loggerhead turtles by comparing the relative growth of body width and depth in relation to body length, and discuss the implications. RESULTS AND DISCUSSION: Results suggest that the differences between scaling relationships of different regional subsets are negligible, and models fitted on data from one region of the western North Atlantic can safely be used on data for the same life stage from another North Atlantic region. On the other hand, using models fitted on data for one life stage to describe other life stages is not recommended if accuracy is of paramount importance. In particular, young loggerhead turtles that have not recruited to neritic habitats should be studied and modeled separately whenever practical, while neritic juveniles and adults can be modeled together as one group. Even though morphometric scaling varies among life stages, a common model for all life stages can be used as a general description of scaling, and assuming isometric growth as a simplification is justified. In addition to linear models traditionally used for scaling on log-log axes, we test the performance of a saturating (curvilinear) model. The saturating model is statistically preferred in some cases, but the accuracy gained by the saturating model is marginal.Entities:
Mesh:
Year: 2015 PMID: 26629702 PMCID: PMC4668024 DOI: 10.1371/journal.pone.0143747
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Data overview.
We studied straight carapace length (SCL), straight carapace width (SCW), and body depth (BD). We used (SCL,SCW), (SCL,BD), and (SCW,BD) data pairs for the analysis, meaning that one data triplet yielded 3 data pairs. See text for details. Life stage subsets: ‘I’—posthatchlings and oceanic juveniles, ‘II’—neritic juveniles, and ‘III’—nesting adults. Range of SCL and SCW values is expressed in cm.
|
|
|
|
| ||||
|---|---|---|---|---|---|---|---|
| ‘north’ | ‘south’ | ‘I’ | ‘II’ | ‘III’ | |||
| (1) ( |
| 371 | 112 ( | 105 ( | 48 ( | 71 ( | 252 ( |
| SCL range | 8.1–109 | 80.7–107.4 | 81–109 | 8.1–41.3 | 42.1–80.6 | 80.7 -109 | |
| (2) ( |
| 280 | - | - | 55 ( | 71 ( | 154 ( |
| SCL range | 8.1–109 | 8.1–40.9 | 41.7–80.6 | 81.4–109 | |||
| (3) ( |
| 253 | - | - | 47 ( | 59 ( | 147 ( |
| SCW range | 6.8–98.5 | 6.8–33.1 [ | 33.8–61 [ | 61.5–98.5 | |||
| (4) ( |
| 5609 ( | 1267 | 1300 [ | 1065 [ | - | - |
| SCL range | 3.4–10.1 | 3.4–10 | 4.1–10 | 3.4–10 | |||
|
|
| 17731 | 2646 | 2705 | 3345 | 201 | 553 |
Data sources:
1[32], Figs 1 and 2 from Appendix 1;
2[31], Fig 3;
3[28], Fig 2 panels c and d;
4 this study
* Digitalization software PlotReader (version 1.55.0.0) was used for data import. Overlaping datapoints could not be differentiated.
** Data pairs reconstructed by relating (log(SCL), log(SCW)), and (log(SCW), log(BD)) data pairs, by using common values of log(SCL). In cases where there was more than one value from one relationship mapping to the single value of the other (due to overlap of the data points), the average of the values was paired with the common measurement.
§ For this relationship, the SCW to SCL relationship was used for dividing data into subsets: smallest SCW from subset ‘II’ was used as SCW at recruitment, and smallest SCW from subset ‘III’ was used as SCW at nesting
† data censored to perform a more balanced analysis: 1300 data triplets were randomly chosen from 4342 data triplets available for that population subset, to match the number of data triplets for the other subset. Later, 1056 data triples were randomly chosen from the 2567 triplets, so that the percentage of (SCL, SCW) data pairs of subset ‘I’ matches the percentage of the total size span occupied by this subset.
Descriptive statistics.
number of data points (N), median, interquartile range (IQR), minimum, and maximum of ratios, for posthatchlings and adults of regional subsets ‘north’ and ‘south’.
| posthatchlings |
|
|
|
|
|
|
| ‘south’ | 1300 | 0.8308 | 0.0345 | 0.5162 | 0.9784 | |
| ‘north’ | 1267 | 0.8141 | 0.0356 | 0.6345 | 1.0199 | |
|
|
|
|
|
|
| |
| ‘south’ | 1300 | 0.4457 | 0.0274 | 0.3398 | 0.5819 | |
| ‘north’ | 1267 | 0.4378 | 0.0280 | 0.3071 | 0.5727 | |
|
|
|
|
|
|
| |
| ‘south’ | 1300 | 0.5374 | 0.0419 | 0.4406 | 0.8834 | |
| ‘north’ | 1267 | 0.5395 | 0.0429 | 0.3766 | 0.6450 | |
| adults |
|
|
|
|
|
|
| ‘south’ | 105 | 0.7638 | 0.0378 | 0.6823 | 0.9268 | |
| ‘north’ | 112 | 0.7577 | 0.0414 | 0.6805 | 0.9618 |
Analysis of linear scaling models for regional subsets ‘north’ and ‘south’.
For each dataset (listed under ‘datasets’) we analyzed the performance of three predictive regression equations, differing only in the values of model parameters. Parameter values are given under the name of the dataset used for regression. R 2 value describes the goodness of fit of the regression equation listed in the column to the dataset listed in the row. ‘Slope diff’ indicates whether or not the slopes of two regression equations are significantly different (Tukey-Kramer test, p < 0.05), where one regression equation is specific for the dataset listed in the row, and the other for the dataset listed in the column. All regression equations are in the form of y = a + b ⋅ x (Eqs 1–3 in ‘Methods’). We analyzed separately data from posthatchlings and adults, see subsection Data for details.
| POSTHATCHLINGS | |||||
| Scaling | Analysis | ||||
|
|
|
|
|
| |
|
|
|
|
| ||
|
|
|
| |||
|
| R2 | 0.9677 | 0.9607 | 0.9659 | |
| Slope diff. | - |
|
| ||
|
| R2 | 0.9699 | 0.9769 | 0.9753 | |
| Slope diff. |
| - |
| ||
|
| R2 | 0.9689 | 0.9691 | 0.9707 | |
| Slope diff. |
|
| - | ||
|
|
|
|
|
| |
|
|
|
|
| ||
|
|
|
| |||
|
| R2 | 0.9420 | 0.9349 | 0.9401 | |
| Slope diff. | - |
| No | ||
|
| R2 | 0.9413 | 0.9481 | 0.9464 | |
| Slope diff. |
| - | No | ||
|
| R2 | 0.9416 | 0.9417 | 0.9434 | |
| Slope diff. | No | No | - | ||
|
|
|
|
|
| |
|
|
|
|
| ||
|
|
|
| |||
|
| R2 | 0.9384 | 0.9383 | 0.9384 | |
| Slope diff. | - | No | No | ||
|
| R2 | 0.9353 | 0.9354 | 0.9353 | |
| Slope diff. | No | - | No | ||
|
| R2 | 0.9368 | 0.9368 | 0.9368 | |
| Slope diff. | No | No | - | ||
| ADULTS | |||||
| Scaling | Analysis | ||||
|
|
|
|
|
| |
|
|
|
|
| ||
|
|
|
| |||
|
| R2 | 0.5382 | 0.5343 | 0.5374 | |
| Slope diff. | - | No | No | ||
|
| R2 | 0.4500 | 0.4531 | 0.4523 | |
| Slope diff. | No | - | No | ||
|
| R2 | 0.5143 | 0.5141 | 0.5151 | |
| Slope diff. | No | No | - | ||
Fig 1Predictions of log(SCW) from log(SCL) by regression equations ‘m ’, ‘m ’, and ‘m ’ specific for regional subsets ‘north’, ‘south’, and ‘both’.
Panels (a) and (b): data from the posthacthling group. Panels (c) and (d): data for the adult group. The recommended regression equations are displayed in the plot, while the parameters for remaining equations are provided in Table 3. Dashed lines mark the 95% confidence intervals of the predictions.
Descriptive statistics.
Number of data points (N), median, interquartile range (IQR), minimum, and maximum of ratios, for life stage subsets ‘I’, ‘II’, and ‘III’.
|
|
|
|
|
|
|
| ‘I’ | 1113 | 0.823 | 0.0385 | 0.510 | 1.020 |
| ‘II’ | 71 | 0.819 | 0.0537 | 0.741 | 0.914 |
| ‘III’ | 252 | 0.761 | 0.0438 | 0.680 | 0.980 |
|
|
|
|
|
|
|
| ‘I’ | 1120 | 0.442 | 0.0279 | 0.288 | 0.521 |
| ‘II’ | 71 | 0.407 | 0.0407 | 0.262 | 0.485 |
| ‘III’ | 154 | 0.364 | 0.0390 | 0.301 | 0.549 |
|
|
|
|
|
|
|
| ‘I’ | 1112 | 0.537 | 0.0409 | 0.377 | 0.695 |
| ‘II’ | 59 | 0.492 | 0.0583 | 0.313 | 0.586 |
| ‘III’ | 147 | 0.477 | 0.0531 | 0.330 | 0.770 |
Analysis of linear scaling models for life stage datasets.
For each dataset (listed under ‘datasets’) we analyzed the performance of six predictive regression equations, differing only in the values of model parameters. Parameter values are given under the name of the dataset used for regression. R 2 value describes the goodness of fit of the regression equation listed in the column to the dataset listed in the row. We marked for readability R 2 values when the regression equation was used for the dataset it was fitted on. ‘Slope diff’ indicates whether or not the slopes of two regression equations are significantly different (Tukey-Kramer test, p < 0.05), where one regression equation is specific for the dataset listed in the row, and the other for the dataset listed in the column. All regression equations are in the form of y = a + b ⋅ x (Eqs 1–3 in Models and statistical analysis). See subsection Data for definitions.
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
| ||
|
|
|
|
|
|
| |||
|
|
| 0.9902 | 0.8148 | 0.0760 | 0.990 | 0.3377 | 0.9886 | |
| Slope diff. | - | No |
| No |
|
| ||
|
|
| 0.7815 | 0.8931 | 0.8805 | 0.8750 | 0.8872 | 0.7885 | |
| Slope diff. | No | - | No | No | No | No | ||
|
|
| N/A | 0.2053 | 0.5059 | N/A | 0.5054 | 0.4046 | |
| Slope diff. |
| No | - |
| No |
| ||
|
|
| 0.9957 | 0.9313 | 0.6587 | 0.9960 | 0.7553 | 0.9952 | |
| Slope diff. | No | No |
| - |
|
| ||
|
|
| 0.5550 | 0.9021 | 0.9328 | 0.7435 | 0.9335 | 0.9110 | |
| Slope diff. |
| No | No |
| - |
| ||
|
|
| 0.9958 | 0.9798 | 0.9023 | 0.9971 | 0.9299 | 0.9982 | |
| Slope diff. |
| No |
|
|
| - | ||
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
| ||
|
|
|
|
|
|
| |||
|
|
| 0.9822 | 0.6550 | 0.5443 | 0.9822 | 0.5792 | 0.9819 | |
| Slope diff. | - | No | No | No |
| No | ||
|
|
| 0.6860 | 0.6992 | 0.6989 | 0.6885 | 0.6990 | 0.6576 | |
| Slope diff. | No | - | No | No | No | No | ||
|
|
| N/A | 0.1910 | 0.1942 | N/A | 0.1942 | 0.1646 | |
| Slope diff. | No | No | - | No | No | No | ||
|
|
| 0.9918 | 0.8662 | 0.8237 | 0.9918 | 0.8371 | 0.9915 | |
| Slope diff. | No | No | No | - |
| No | ||
|
| R2 | 0.7512 | 0.8088 | 0.8093 | 0.7626 | 0.8093 | 0.7974 | |
| Slope diff. |
| No | No |
| - |
| ||
|
|
| 0.9949 | 0.9476 | 0.9315 | 0.9950 | 0.9366 | 0.9953 | |
| Slope diff. | No | No | No | No |
| - | ||
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
| ||
|
|
|
|
|
|
| |||
|
|
| 0.9776 | 0.0068 | N/A | 0.9775 | 0.9076 | 0.9771 | |
| Slope diff. | - | No |
| No | No | No | ||
|
|
| 0.4931 | 0.5755 | N/A | 0.5397 | 0.5310 | 0.5455 | |
| Slope diff. | No | - |
| No | No |
| ||
|
|
| N/A | N/A | 0.0596 | N/A | N/A | N/A | |
| Slope diff. |
|
| - |
|
|
| ||
|
|
| 0.9892 | 0.5963 | N/A | 0.9893 | 0.9610 | 0.9892 | |
| Slope diff. | No | No |
| - | No | No | ||
|
|
| 0.6931 | 0.6521 | 0.3818 | 0.7322 | 0.7512 | 0.7489 | |
| Slope diff. | No | No |
| No | - | No | ||
|
|
| 0.9938 | 0.8562 | N/A | 0.9941 | 0.9845 | 0.9943 | |
| Slope diff. | No |
|
| No | No | - | ||
† The linear model y = a + bx underperforms relative to the null-model with b = 0.
Fig 2Model slopes with 95% confidence intervals.
For scaling relationships of SCW to SCL (panel (a)), BD to SCL (panel (b)), and BD to SCW (panel (c)). In addition to slopes of regression equations specific for life stage subsets (‘I’, ‘II’, and ‘III’, marked with circles), and combined data sets (‘I + II’, ‘II + III’, and ‘I + II + III’, marked with asterisks), we show slopes of regression equations specific for regional subsets, which describe either exclusively posthatchlings (‘I ’, ‘I ’) or nesting adults (‘III ’, ‘III ’), all marked with dots. Analysis of regional subsets is described in section Analysis of regional subsets ‘north’ and ‘south’. Horizontal full line represents the slope of an isometric model (b = 1).
Fig 3Predictions of log(SCW) by regression equations ‘m ’, ‘m ’, and ‘m ’.
Regression equations are specific for life stage subsets ‘I’, ‘II’, and ‘III’ (respectively). Panel (a): subset ‘I’, panel (b): subsets ‘II’ and ‘III’. Parameters for the equations are provided in Table 5.
Fig 4Fit of suggested subset-specific (‘m ’, ‘m ’, panels (a), (c), (e)), and non-specific (‘m ’, panels (b), (d), (f)) linear scaling models to data.
The relationship of log(SCW) to log(SCL) is shown in panels (a) and (b), the relationship of log(BD) to log(SCL) in panels (c) and (d), and the relationship of log(BD) to log(SCW) in panels (e) and (f). The recommended regression equations are displayed in the plot, while parameters for remaining equations are provided in Table 5. Dashed lines mark the 95% confidence intervals of the predictions. Black arrows in panels (b), (d), and (f) point to the size range in which predictions are underestimated.
Comparison of the allometric model (value of b regressed by model fitting) to the isometric model (b = 1).
As the allometric model we used the predictive regression equation ‘m ’. As size at the event of interest, we used average values at hatching SCL = 4.5 cm [33], recruitment SCL = 48 cm [9], and nesting SCL = 93 cm [28, 31] for the relationships of carapace width and body depth to carapace length. For the relationship of body depth to carapace width we calculated SCW values that would correspond to average carapace lengths at hatching, recruitment, and nesting, using ‘m ’. Error was calculated for log transformed data as [100(value predicted by isometric model—value predicted by allometric model)/ value predicted by allometric model].
| predictions range (cm) | ||||
|---|---|---|---|---|
| event of interest | relationship | error (%) |
|
|
|
| -1.41 | 3.39–4.06 | 3.63–3.65 | |
| hatching |
| -7.05 | 1.79–2.30 | 1.92–1.94 |
|
| -5.17 | 1.78–2.33 | 1.95–1.97 | |
|
| 0.69 | 34.60–41.45 | 38.73–38.93 | |
| recruitment |
| 2.95 | 16.69–21.43 | 20.53–20.72 |
|
| 2.32 | 16.37–21.45 | 19.97–20.14 | |
|
| 0.87 | 66.23–79.33 | 75.04–75.43 | |
| nesting |
| 3.51 | 31.12–39.98 | 39.78–40.15 |
|
| 2.74 | 30.42–39.87 | 38.22–38.55 | |
Comparison of the linear (lin.) and saturating (sat.) type of models ‘m ’, ‘m ’, and ‘m ’ for the three studied relationships.
Performance of models was tested on datasets ‘I’, ‘II + III’, and ‘I + II + III’, and evaluated by goodness of fit statistics (R, Root Mean Square Error (RMSE)), and Akaike weights).
| dataset/ | type of model | log | log | log | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
|
|
|
|
|
|
|
|
|
| ||
|
| lin. | 0.9902 | 0.0391 | 1.0000 | 0.9822 | 0.0519 | 0.0000 | 0.9776 | 0.0557 | 1.0000 |
| sat. | 0.9897 | 0.0401 | 0.0000 | 0.9828 | 0.0510 | 1.0000 | 0.9763 | 0.0572 | 0.0000 | |
|
| lin. | 0.9335 | 0.0492 | 0.2856 | 0.8093 | 0.1003 | 0.5525 | 0.7512 | 0.1149 | 0.3647 |
| sat. | 0.9339 | 0.0491 | 0.7144 | 0.8090 | 0.1004 | 0.4475 | 0.7525 | 0.1146 | 0.6353 | |
|
| lin. | 0.9982 | 0.0460 | 0.0000 | 0.9953 | 0.0637 | 0.0000 | 0.9943 | 0.0688 | 1.0000 |
| sat. | 0.9983 | 0.0439 | 1.0000 | 0.9955 | 0.0623 | 1.0000 | 0.9940 | 0.0704 | 0.0000 | |
Fig 5Predictions of SCW and BD by two types (M1—linear, and M2—saturating) of models ‘m ’, ‘m ’, and ‘m ’.
Predictions are given for average sizes at specific events (hatching, recruitment, nesting). Symbols are coded based on the model (each symbol corresponds to one model), and type (full or empty symbol).