Literature DB >> 26627623

Parametrization and Validation of Intramolecular Force Fields Derived from DFT Calculations.

Ivo Cacelli1, Giacomo Prampolini1.   

Abstract

The energy and its first and second geometrical derivatives obtained by DFT calculations for a number of conformations of a single molecule are used to parametrize intramolecular force fields, suitable for computer simulations. A systematic procedure is proposed to adequately treat either fully atomistic or more simplified force fields, as within the united atom approach or other coarse grained models. The proposed method is tested and validated by performing molecular dynamics simulations on several different molecules, comparing the results with literature force fields and relevant experimental data. Particular emphasis is given to the united atom approach for flexible molecules characterized by "soft" torsional potentials which are known to retain a high degree of chemical specificity.

Year:  2007        PMID: 26627623     DOI: 10.1021/ct700113h

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  11 in total

1.  Molecular Modeling of ABHD5 Structure and Ligand Recognition.

Authors:  Rezvan Shahoei; Susheel Pangeni; Matthew A Sanders; Huamei Zhang; Ljiljana Mladenovic-Lucas; William R Roush; Geoff Halvorsen; Christopher V Kelly; James G Granneman; Yu-Ming M Huang
Journal:  Front Mol Biosci       Date:  2022-06-28

2.  Structural, dynamic and photophysical properties of a fluorescent dye incorporated in an amorphous hydrophobic polymer bundle.

Authors:  N De Mitri; G Prampolini; S Monti; V Barone
Journal:  Phys Chem Chem Phys       Date:  2014-08-21       Impact factor: 3.676

3.  Analytical gradients for MP2, double hybrid functionals, and TD-DFT with polarizable embedding described by fluctuating charges.

Authors:  Ivan Carnimeo; Chiara Cappelli; Vincenzo Barone
Journal:  J Comput Chem       Date:  2015-09-24       Impact factor: 3.376

4.  Iron's Wake: The Performance of Quantum Mechanical-Derived Versus General-Purpose Force Fields Tested on a Luminescent Iron Complex.

Authors:  Valentin Diez-Cabanes; Giacomo Prampolini; Antonio Francés-Monerris; Antonio Monari; Mariachiara Pastore
Journal:  Molecules       Date:  2020-07-06       Impact factor: 4.411

5.  Probing Liquid-Ordered and Disordered Phases in Lipid Model Membranes: A Combined Theoretical and Spectroscopic Study of a Fluorescent Molecular Rotor.

Authors:  Gianluca Del Frate; Marina Macchiagodena; Muhammad Jan Akhunzada; Francesca D'Autilia; Andrea Catte; Nicholus Bhattacharjee; Vincenzo Barone; Francesco Cardarelli; Giuseppe Brancato
Journal:  J Phys Chem B       Date:  2022-01-10       Impact factor: 2.991

6.  Extension of the AMBER Force Field for Nitroxide Radicals and Combined QM/MM/PCM Approach to the Accurate Determination of EPR Parameters of DMPO-H in Solution.

Authors:  Laura Hermosilla; Giacomo Prampolini; Paloma Calle; José Manuel García de la Vega; Giuseppe Brancato; Vincenzo Barone
Journal:  J Chem Theory Comput       Date:  2013-07-15       Impact factor: 6.006

7.  Absorption and Emission Spectra of a Flexible Dye in Solution: a Computational Time-Dependent Approach.

Authors:  Nicola De Mitri; Susanna Monti; Giacomo Prampolini; Vincenzo Barone
Journal:  J Chem Theory Comput       Date:  2013-10-08       Impact factor: 6.006

8.  Tuning of dye optical properties by environmental effects: a QM/MM and experimental study.

Authors:  Gianluca Del Frate; Fabio Bellina; Giordano Mancini; Giulia Marianetti; Pierpaolo Minei; Andrea Pucci; Vincenzo Barone
Journal:  Phys Chem Chem Phys       Date:  2016-03-22       Impact factor: 3.676

9.  Probing Solute-Solvent Interactions of Transition Metal Complexes Using L-Edge Absorption Spectroscopy.

Authors:  Raphael M Jay; Vinícius Vaz da Cruz; Sebastian Eckert; Mattis Fondell; Rolf Mitzner; Alexander Föhlisch
Journal:  J Phys Chem B       Date:  2020-06-29       Impact factor: 2.991

10.  Computational Spectroscopy in Solution by Integration of Variational and Perturbative Approaches on Top of Clusterized Molecular Dynamics.

Authors:  Giordano Mancini; Sara Del Galdo; Balasubramanian Chandramouli; Marco Pagliai; Vincenzo Barone
Journal:  J Chem Theory Comput       Date:  2020-08-11       Impact factor: 6.006

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