Literature DB >> 26627612

Empirical Correction to Molecular Interaction Energies in Density Functional Theory (DFT) for Methane Hydrate Simulation.

Qi-Shi Du1, Peng-Jun Liu1, Jun Deng1.   

Abstract

A general and empirical method is proposed for correction of London dispersion and other deficiencies in density functional theory (DFT). This method is based on the existing Lennard-Jones (L-J) equation and van der Waals parameters. The benchmark of energy correction is set as the energy difference between DFT and more accurate methods, for example CCSD(T). The energy correction includes all differences between CCSD(T) and DFT, dispersion energy, configuration interaction, induction interaction, residual correlation, and other effects. The energy correction is expressed as a linear combination of van der Waals potentials of nonbonded atomic pairs. The combination coefficients are determined using a least-squares approach in a training set of molecular pairs. The coefficients then can be used for the energy corrections in DFT calculations in a molecular family. Three correction equations of molecular pair interaction energy, water-water, water-methane, and methane-methane, are derived for methane hydrate simulation. The correction equation of the water-water pair is applied in the DFT calculation of water pentamer, yielding good intermolecular potential energy surfaces (PES), very close to the results of CCSD(T) over the active interaction range from 2.1 Å to 8.0 Å.

Entities:  

Year:  2007        PMID: 26627612     DOI: 10.1021/ct700026d

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  5 in total

1.  Factors that distort the heme structure in Heme-Nitric Oxide/OXygen-Binding (H-NOX) protein domains. A theoretical study.

Authors:  Meng-Sheng Liao; Ming-Ju Huang; John D Watts
Journal:  J Inorg Biochem       Date:  2012-09-16       Impact factor: 4.155

2.  Binding of O2 and NO to heme in heme-nitric oxide/oxygen-binding (H-NOX) proteins. A theoretical study.

Authors:  Meng-Sheng Liao; Ming-Ju Huang; John D Watts
Journal:  J Phys Chem B       Date:  2013-08-22       Impact factor: 2.991

3.  Theoretical study on the polar hydrogen-π (Hp-π) interactions between protein side chains.

Authors:  Qi-Shi Du; Qing-Yan Wang; Li-Qin Du; Dong Chen; Ri-Bo Huang
Journal:  Chem Cent J       Date:  2013-05-25       Impact factor: 4.215

4.  The multiple roles of histidine in protein interactions.

Authors:  Si-Ming Liao; Qi-Shi Du; Jian-Zong Meng; Zong-Wen Pang; Ri-Bo Huang
Journal:  Chem Cent J       Date:  2013-03-01       Impact factor: 4.215

5.  Exploring Strong Interactions in Proteins with Quantum Chemistry and Examples of Their Applications in Drug Design.

Authors:  Neng-Zhong Xie; Qi-Shi Du; Jian-Xiu Li; Ri-Bo Huang
Journal:  PLoS One       Date:  2015-09-04       Impact factor: 3.240

  5 in total

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