| Literature DB >> 26627480 |
Laura M Vilander1, Mari A Kaunisto2,3, Ville Pettilä4.
Abstract
BACKGROUND: The risk of an individual to develop an acute kidney injury (AKI), or its severity, cannot be reliably predicted by common clinical risk factors. Whether genetic risk factors have an explanatory role poses an interesting question, however. Thus, we conducted a systematic literature review regarding genetic predisposition to AKI or outcome of AKI patients.Entities:
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Year: 2015 PMID: 26627480 PMCID: PMC4667497 DOI: 10.1186/s12882-015-0190-6
Source DB: PubMed Journal: BMC Nephrol ISSN: 1471-2369 Impact factor: 2.388
Fig. 1Study flow chart. The literature search was performed on March 5th 2015. Abbreviations: AKI, Acute Kidney Injury
Study quality scoring system adapted from Clark et al. [23]. Studies were assessed using specific criteria described below and scored 1 point if a criterion was fulfilled. [Adaptation by current reviewers in italic]
| Criterion | Original criteria by Clark et al. | Specific criteria |
|---|---|---|
| 1. Defining the Control Group | Control group described for size in relation to case group ( |
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| 2. Hardy-Weinberg Equilibrium | Case and control groups assessed for Hardy-Weinberg equilibrium (HWE). |
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| 3. Defining the Case Group | The disease state of interest as well as inclusion and exclusion criteria of the case group defined in sufficient detail to allow replication. |
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| 4. Primer Sequence | The priming sequences used for genotyping or references to them provided. |
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| 5. Describing the Methods | Genotyping method described in sufficient detail to allow replication. In addition, second validating assay performed or the accuracy of the assay validated. |
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| 6. Blinding | Genotyping performed blinded to clinical status. | |
| 7. Power Calculation | Prospective or retrospective power calculation performed. |
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| 8. Statistics | Tests of significance presented: such as p values, confidence intervals, or odds ratios. | |
| 9. Corrected Statistics | Corrected for the increased risk of false-positive error in the case of multiple polymorphisms studied. Should |
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| 10. Replication | Study performing second, confirmatory study or confirming earlier polymorphism study. |
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In accordance with Lu et al. [9]
Characteristics of articles
| Characteristic | N | References |
|---|---|---|
| Clinical setting | ||
| Post cardiac surgery | 12 | [ |
| ICU treatment | 6 | [ |
| Hospitalization with kidney injury | 5 | [ |
| Dialysis | 1 | [ |
| Other | 4 | [ |
| Study design | ||
| Prospective cohort | 23 | [ |
| Prospective case–control | 4 | [ |
| Retrospective case-cohort | 1 | [ |
| Center of data acquisition | ||
| Single | 14 | [ |
| Multi | 12 | [ |
| Not applicable | 2 | [ |
| Definition of AKI | ||
| RIFLE | 8 | [ |
| AKIN | 7 | [ |
| Renal-SOFA | 1 | [ |
| Administration of RRT | 2 | [ |
| Creatinine level | 4 | [ |
| Not applicable | 6 | [ |
| Studied polymorphisms | ||
| 1 polymorphism | 11 | [ |
| 1 gene, several polymorphisms | 4 | [ |
| Several genes | 12 | [ |
| GWAS | 1 | [ |
| Ethnicity | ||
| Caucasian | 9 | [ |
| Mixed | 10 | [ |
| Not applicable | 9 | [ |
| Main outcome | ||
| AKI | 26 | [ |
| Other | 2 | [ |
Abbreviations: AKI Acute Kidney Injury, AKIN Acute Kidney Injury Network -classification, GWAS Genome-Wide Association Study, ICU Intensive Care Unit, RIFLE Risk Injury Failure Loss of function End stage -classification, RRT renal replacement therapy, SOFA, Sequential Organ Failure Assessment score
Fig. 2Quality scores according to each criterion. (Full description of criteria is given in Table 1)
Fig. 3Genes studied for association with either susceptibility to AKI (S) or AKI outcome (O). Red color indicates positive association signals (based on the interpretation of the authors themselves), where dark red signals higher (≥8) quality score and light red signals lower quality score (3–7). Blue color indicates no association. Articles are presented alphabetically by the fist author and genes are presented in alphabetical order. Abbreviations: ACE, Angiotensin Converting Enzyme gene; AGTR1, Angiotensin II Receptor, Type 1 gene; AGT, Angiotensinogen gene; APOE, Apolipoprotein-E gene; BCL-2, B-cell CLL/lymphoma 2 gene; COMT, Catechol-O-methyltransferase gene; CYBA, Cytochrome b245, α subunit gene; eNOS, endothelial Nitric Oxide Synthase gene; EPO, Erythropoietin gene; FCGR2A, Receptor IIa of the Fc portion of immunoglobulin G gene; FCGR3A, Receptor IIIa of the Fc portion of immunoglobulin G gene; FCGR3B, Receptor IIIb of the Fc portion of immunoglobulin G gene; GLI1, Gli family zinc finger 1 gene; HHIP, Hedgehog Interacting Protein gene; HIF-1-alpha, Hypoxia-Inducible Factor 1-alpha gene; HLA-DRB1, Human Leukocyte Antigen – Major Histocompatibility Complex, Class II, DR beta 1 gene; IL-6, Interleukin-6 gene; IL-8, Interleukin-8; IL-10, Interleukin-10 gene; LTA, Lymphotoxin Alpha gene; MPO, Myeloperoxidase gene; NADPH, Nicotinamide Adenosine Dinucleotide Phosphate gene; PBEF, Pre-B cell colony-enhancing factor gene; PNMT, Phenylethanolamine N-methyltransferase gene; PTCH1, Patched homolog 1 gene; PTCH2, Patched homolog 2 gene; SERPINA4, Serpin Peptidase Inhibitor, Clade A (alpha-1 antiproteinase, antitrypsin) Member 4 gene; SERPINA5, Serpin Peptidase Inhibitor, Clade A (alpha-1 antiproteinase, antitrypsin) Member 5 gene; SIK3, Salt-Inducible Kinase 3 gene; SMO, Smoothened gene; SUFU, Suppressor of Fused homolog gene; TGF-β, Transient Growth Factor beta gene; TNFA, Tumor Necrosis Factor alpha gene; VEGF, Vascular Endothelial Growth Factor gene