Literature DB >> 26627421

Computation of Accurate Activation Barriers for Methyl-Transfer Reactions of Sulfonium and Ammonium Salts in Aqueous Solution.

Hakan Gunaydin1, Orlando Acevedo1, William L Jorgensen1, K N Houk1.   

Abstract

The energetics of methyl-transfer reactions from dimethylammonium, tetramethylammonium, and trimethylsulfonium to dimethylamine were computed with density functional theory, MP2, CBS-QB3, and quantum mechanics/molecular mechanics (QM/MM) Monte Carlo methods. At the CBS-QB3 level, the gas-phase activation enthalpies are computed to be 9.9, 15.3, and 7.9 kcal/mol, respectively. MP2/6-31+G(d,p) activation enthalpies are in best agreement with the CBS-QB3 results. The effects of aqueous solvation on these reactions were studied with polarizable continuum model, generalized Born/surface area (GB/SA), and QM/MM Monte Carlo simulations utilizing free-energy perturbation theory in which the PDDG/PM3 semiempirical Hamiltonian for the QM and explicit TIP4P water molecules in the MM region were used. In the aqueous phase, all of these reactions proceed more slowly when compared to the gas phase, since the charged reactants are stabilized more than the transition structure geometries with delocalized positive charges. In order to obtain the aqueous-phase activation free energies, the gas-phase activation free energies were corrected with the solvation free energies obtained from single-point conductor-like polarizable continuum model and GB/SA calculations for the stationary points along the reaction coordinate.

Entities:  

Year:  2007        PMID: 26627421     DOI: 10.1021/ct050318n

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  9 in total

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Journal:  J Comput Aided Mol Des       Date:  2015-12-14       Impact factor: 3.686

2.  Application of a BOSS-Gaussian interface for QM/MM simulations of Henry and methyl transfer reactions.

Authors:  Jonah Z Vilseck; Jakub Kostal; Julian Tirado-Rives; William L Jorgensen
Journal:  J Comput Chem       Date:  2015-08-27       Impact factor: 3.376

3.  Quantum and Molecular Mechanical (QM/MM) Monte Carlo Techniques for Modeling Condensed-Phase Reactions.

Authors:  Orlando Acevedo; Wiliiam L Jorgensen
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2014-09

4.  A remodeled protein arginine methyltransferase 1 (PRMT1) generates symmetric dimethylarginine.

Authors:  Shanying Gui; Symon Gathiaka; Jun Li; Jun Qu; Orlando Acevedo; Joan M Hevel
Journal:  J Biol Chem       Date:  2014-01-29       Impact factor: 5.157

5.  Advances in quantum and molecular mechanical (QM/MM) simulations for organic and enzymatic reactions.

Authors:  Orlando Acevedo; William L Jorgensen
Journal:  Acc Chem Res       Date:  2010-01-19       Impact factor: 22.384

6.  Effects of solvents on the DACBO-catalyzed vinylogous Henry reaction of isatin with 3,5-dimethyl-4-nitroisoxazole "on-water" and in solution from QM/MM MC simulations.

Authors:  Lian Yang; Jianming Zhao; Xin Yang; Ming Chen; Ying Xue
Journal:  RSC Adv       Date:  2019-02-08       Impact factor: 4.036

7.  Investigation of Structural Dynamics of Enzymes and Protonation States of Substrates Using Computational Tools.

Authors:  Chia-En A Chang; Yu-Ming M Huang; Leonard J Mueller; Wanli You
Journal:  Catalysts       Date:  2016-05-31       Impact factor: 4.146

8.  Semiempirical Quantum-Chemical Methods with Orthogonalization and Dispersion Corrections.

Authors:  Pavlo O Dral; Xin Wu; Walter Thiel
Journal:  J Chem Theory Comput       Date:  2019-02-27       Impact factor: 6.006

9.  Semiempirical Quantum-Chemical Orthogonalization-Corrected Methods: Benchmarks for Ground-State Properties.

Authors:  Pavlo O Dral; Xin Wu; Lasse Spörkel; Axel Koslowski; Walter Thiel
Journal:  J Chem Theory Comput       Date:  2016-01-29       Impact factor: 6.006

  9 in total

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