Literature DB >> 26626528

NO-MNDO:  Reintroduction of the Overlap Matrix into MNDO.

Kurt W Sattelmeyer1, Ivan Tubert-Brohman1, William L Jorgensen1.   

Abstract

The effect of reintroducing the overlap matrix into the secular equations for an NDDO (neglect of diatomic differential overlap)-based semiempirical molecular orbital method has been investigated. The modification is expected to improve the description of interactions between electron pairs. The idea has been tested by implementation and evaluation of a nonorthogonal version of the MNDO method (NO-MNDO) with parametrization for hydrogen, carbon, nitrogen, and oxygen. Overall, the accuracy of NO-MNDO for heats of formation is nearly identical to that for the more highly parametrized AM1 method. The mean absolute error (MAE) for heats of formation of a comprehensive set of 622 neutral, closed-shell molecules is reduced from 8.4 kcal/mol with MNDO to 6.8 kcal/mol with NO-MNDO. In addition, the performance for conformational equilibria and torsional barriers is significantly improved with NO-MNDO, presumably owing to the improved description of closed-shell interactions. For molecular geometries, the usual training and test sets have been expanded through use of MP2/6-31G(d) results for consistent comparisons. The performance of NO-MNDO for bond lengths, bond angles, and dihedral angles remains good with MAEs of 0.017 Å, 2.5°, and 4.5°. Additionally, NO-MNDO corrects severe errors by MNDO for R(•) + H-R' hydrogen-atom transfers, while testing for activation barriers for nine pericyclic reactions reveals only modest improvement.

Entities:  

Year:  2006        PMID: 26626528     DOI: 10.1021/ct050174c

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  7 in total

1.  Density-functional expansion methods: evaluation of LDA, GGA, and meta-GGA functionals and different integral approximations.

Authors:  Timothy J Giese; Darrin M York
Journal:  J Chem Phys       Date:  2010-12-28       Impact factor: 3.488

2.  Quantum and Molecular Mechanical (QM/MM) Monte Carlo Techniques for Modeling Condensed-Phase Reactions.

Authors:  Orlando Acevedo; Wiliiam L Jorgensen
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2014-09

3.  Advances in quantum and molecular mechanical (QM/MM) simulations for organic and enzymatic reactions.

Authors:  Orlando Acevedo; William L Jorgensen
Journal:  Acc Chem Res       Date:  2010-01-19       Impact factor: 22.384

4.  Semiempirical Quantum-Chemical Methods with Orthogonalization and Dispersion Corrections.

Authors:  Pavlo O Dral; Xin Wu; Walter Thiel
Journal:  J Chem Theory Comput       Date:  2019-02-27       Impact factor: 6.006

5.  Semiempirical Quantum-Chemical Orthogonalization-Corrected Methods: Theory, Implementation, and Parameters.

Authors:  Pavlo O Dral; Xin Wu; Lasse Spörkel; Axel Koslowski; Wolfgang Weber; Rainer Steiger; Mirjam Scholten; Walter Thiel
Journal:  J Chem Theory Comput       Date:  2016-01-29       Impact factor: 6.006

6.  Semiempirical Quantum-Chemical Orthogonalization-Corrected Methods: Benchmarks for Ground-State Properties.

Authors:  Pavlo O Dral; Xin Wu; Lasse Spörkel; Axel Koslowski; Walter Thiel
Journal:  J Chem Theory Comput       Date:  2016-01-29       Impact factor: 6.006

7.  Density-functional tight-binding: basic concepts and applications to molecules and clusters.

Authors:  Fernand Spiegelman; Nathalie Tarrat; Jérôme Cuny; Leo Dontot; Evgeny Posenitskiy; Carles Martí; Aude Simon; Mathias Rapacioli
Journal:  Adv Phys X       Date:  2020-02-18
  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.