Literature DB >> 26621609

The GL service: Web service to exchange GL string encoded HLA & KIR genotypes with complete and accurate allele and genotype ambiguity.

Robert P Milius1, Michael Heuer2, Mike George2, Jane Pollack2, Jill A Hollenbach3, Steven J Mack4, Martin Maiers2.   

Abstract

Genotype list (GL) Strings use a set of hierarchical character delimiters to represent allele and genotype ambiguity in HLA and KIR genotypes in a complete and accurate fashion. A RESTful web service called genotype list service was created to allow users to register a GL string and receive a unique identifier for that string in the form of a URI. By exchanging URIs and dereferencing them through the GL service, users can easily transmit HLA genotypes in a variety of useful formats. The GL service was developed to be secure, scalable, and persistent. An instance of the GL service is configured with a nomenclature and can be run in strict or non-strict modes. Strict mode requires alleles used in the GL string to be present in the allele database using the fully qualified nomenclature. Non-strict mode allows any GL string to be registered as long as it is syntactically correct. The GL service source code is free and open source software, distributed under the GNU Lesser General Public License (LGPL) version 3 or later.
Copyright © 2015 The Authors. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  GL string; Genotype; HLA; KIR; RESTful service

Mesh:

Substances:

Year:  2015        PMID: 26621609      PMCID: PMC4828303          DOI: 10.1016/j.humimm.2015.11.017

Source DB:  PubMed          Journal:  Hum Immunol        ISSN: 0198-8859            Impact factor:   2.850


  4 in total

1.  A community standard for immunogenomic data reporting and analysis: proposal for a STrengthening the REporting of Immunogenomic Studies statement.

Authors:  J A Hollenbach; S J Mack; P-A Gourraud; R M Single; M Maiers; D Middleton; G Thomson; S G E Marsh; M D Varney
Journal:  Tissue Antigens       Date:  2011-11

Review 2.  Maintaining updated DNA-based HLA assignments in the National Marrow Donor Program Bone Marrow Registry.

Authors:  M Maiers; C K Hurley; L Perlee; M Fernandez-Vina; J Baisch; D Cook; P Fraser; U Heine; S Hsu; M S Leffell; D Mauer; H Noreen; T Tang; M Trucco; S Y Yang; R J Hartzman; M Setterholm; T Winden; D Shepherd; J Hegland
Journal:  Rev Immunogenet       Date:  2000

3.  The IMGT/HLA database.

Authors:  James Robinson; Jason A Halliwell; Hamish McWilliam; Rodrigo Lopez; Peter Parham; Steven G E Marsh
Journal:  Nucleic Acids Res       Date:  2012-10-17       Impact factor: 16.971

4.  Genotype List String: a grammar for describing HLA and KIR genotyping results in a text string.

Authors:  R P Milius; S J Mack; J A Hollenbach; J Pollack; M L Heuer; L Gragert; S Spellman; L A Guethlein; E A Trachtenberg; S Cooley; W Bochtler; C R Mueller; J Robinson; S G E Marsh; M Maiers
Journal:  Tissue Antigens       Date:  2013-08
  4 in total
  3 in total

1.  Collection and storage of HLA NGS genotyping data for the 17th International HLA and Immunogenetics Workshop.

Authors:  Chia-Jung Chang; Kazutoyo Osoegawa; Robert P Milius; Martin Maiers; Wenzhong Xiao; Marcelo Fernandez-Viňa; Steven J Mack
Journal:  Hum Immunol       Date:  2017-12-14       Impact factor: 2.850

2.  Next-generation HLA typing of 382 International Histocompatibility Working Group reference B-lymphoblastoid cell lines: Report from the 17th International HLA and Immunogenetics Workshop.

Authors:  Lisa E Creary; Sandra G Guerra; Winnie Chong; Colin J Brown; Thomas R Turner; James Robinson; Will P Bultitude; Neema P Mayor; Steven G E Marsh; Katsuyuki Saito; Kevin Lam; Jamie L Duke; Timothy L Mosbruger; Deborah Ferriola; Dimitrios Monos; Amanda Willis; Medhat Askar; Gottfried Fischer; Chee Loong Saw; Jiannis Ragoussis; Martin Petrek; Carles Serra-Pagés; Manel Juan; Catherine Stavropoulos-Giokas; Amalia Dinou; Reem Ameen; Salem Al Shemmari; Eric Spierings; Ketevan Gendzekhadze; Gerald P Morris; Qiuheng Zhang; Zahra Kashi; Susan Hsu; Sridevi Gangavarapu; Kalyan C Mallempati; Fumiko Yamamoto; Kazutoyo Osoegawa; Tamara Vayntrub; Chia-Jung Chang; John A Hansen; Marcelo A Fernández-Viňa
Journal:  Hum Immunol       Date:  2019-03-04       Impact factor: 2.850

3.  High-resolution HLA allele and haplotype frequencies in several unrelated populations determined by next generation sequencing: 17th International HLA and Immunogenetics Workshop joint report.

Authors:  Lisa E Creary; Nicoletta Sacchi; Michela Mazzocco; Gerald P Morris; Gonzalo Montero-Martin; Winnie Chong; Colin J Brown; Amalia Dinou; Catherine Stavropoulos-Giokas; Clara Gorodezky; Saranya Narayan; Srinivasan Periathiruvadi; Rasmi Thomas; Dianne De Santis; Jennifer Pepperall; Gehad E ElGhazali; Zain Al Yafei; Medhat Askar; Shweta Tyagi; Uma Kanga; Susana R Marino; Dolores Planelles; Chia-Jung Chang; Marcelo A Fernández-Viña
Journal:  Hum Immunol       Date:  2021-05-24       Impact factor: 2.211

  3 in total

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