Literature DB >> 26620785

Influence of Density Functionals and Basis Sets on One-Bond Carbon-Carbon NMR Spin-Spin Coupling Constants.

R Suardíaz1, C Pérez1, R Crespo-Otero1, José M García de la Vega1, Jesús San Fabián1.   

Abstract

The basis set and the functional dependence of one-bond carbon-carbon NMR spin-spin coupling constants (SSCC) have been analyzed using density functional theory. Four basis sets (6-311G**, TZVP, EPR-III, and aug-cc-pVTZ-J) and four functionals (PBE, PW91, B3LYP, and B3P86) are tested by comparison with 70 experimental values corresponding to 49 molecules that represent multiple types of hybridization of the carbon atoms. The two hybrid functionals B3P86 and B3LYP combined either EPR-III or aug-cc-pVTZ-J basis sets lead to the best accuracy of calculated SSCC. However, a simple linear regression allows for the obtaining of scaled coupling constants that fit much better with the experimental data and where the differences between the different basis sets and/or functional results are significantly reduced. For large molecules the TZVP basis set can be an appropriate election presenting a good compromise between quality of results and computational cost.

Entities:  

Year:  2008        PMID: 26620785     DOI: 10.1021/ct7003287

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  2 in total

1.  Generation of the configurational ensemble of an intrinsically disordered protein from unbiased molecular dynamics simulation.

Authors:  Utsab R Shrestha; Puneet Juneja; Qiu Zhang; Viswanathan Gurumoorthy; Jose M Borreguero; Volker Urban; Xiaolin Cheng; Sai Venkatesh Pingali; Jeremy C Smith; Hugh M O'Neill; Loukas Petridis
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-23       Impact factor: 11.205

2.  Full structural ensembles of intrinsically disordered proteins from unbiased molecular dynamics simulations.

Authors:  Utsab R Shrestha; Jeremy C Smith; Loukas Petridis
Journal:  Commun Biol       Date:  2021-02-23
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.