| Literature DB >> 26620701 |
Helle Holm Hansson1,2, Louise Turner3,4, Line Møller5,6, Christian William Wang7,8, Daniel T R Minja9, Samwel Gesase10, Bruno Mmbando11, Ib Christian Bygbjerg12,13, Thor G Theander14,15, John P A Lusingu16,17, Michael Alifrangis18,19, Thomas Lavstsen20,21.
Abstract
BACKGROUND: Endothelial protein C receptor (EPCR) was recently identified as a key receptor for Plasmodium falciparum erythrocyte membrane protein 1 mediating sequestration of P. falciparum-infected erythrocytes in patients suffering from severe malaria. Soluble EPCR (sEPCR) inhibits binding of P. falciparum to EPCR in vitro and increased levels of sEPCR have been associated with the H3 haplotype of the EPCR encoding PROCR gene. It has been hypothesized that elevated sEPCR levels, possibly linked to the PROCR H3 genetic variant, may confer protection against severe forms of malaria. This study determined the frequencies of PROCR haplotypes H1-4 and plasma levels of sEPCR in a Tanzanian study population to investigate a possible association with severe malaria.Entities:
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Year: 2015 PMID: 26620701 PMCID: PMC4666078 DOI: 10.1186/s12936-015-1007-6
Source DB: PubMed Journal: Malar J ISSN: 1475-2875 Impact factor: 2.979
Haplotypes of the PROCR gene encoding endothelial protein C receptor (EPCR)
| EPCR | T(4414)C | C(4868)T | A(6936)G |
|---|---|---|---|
| H1 | T |
| A |
| H2 | T | T | A |
| H3 | T | T |
|
| H4 |
| T | A |
The four haplotypes are determined by three SNPs. Nucleotides defining the haplotype are marked in italics
NA not available
Primers and conditions for the PROCR polymerase chain reaction (PCR) and ligase detection reactions (LDR)
| Sequences | Conditions | Microsphere number | |
|---|---|---|---|
|
| |||
| Set 1 | Fw 5′-CCAGGTTATAATAAGCACTGAATCG-3′ |
| |
| Set 2 | Fw 5′-GGCCTATTCTTCGGGCTAAC-3′ | ||
| 251 bp | Rv 5′-TGGTGTTTCAGTTGGGGAGT-3′ | ||
|
| |||
| 4414 common | 5′-PHOS-TGAGATCATGTCCTTTTCCTACTT-BIO-3′ |
| |
| 4414 T(A) | 5′-ctttctcatactttcaactaatttCTCCACCTGACCCAGGG | 20 | |
| 4414 C (G) | 5′-ctttcttaatacattacaacatacCTCCACCTGACCCAGGG | 25 | |
| 4868 common | 5′-PHOS-CTTCAGCCTGGGCCG-BIO-3′ | ||
| 4868 C (G) | 5′-catcttcatatcaattctcttattCTGCGGGCAGAGTCA | 35 | |
| 4868 T (A) | 5′-tactacttctataactcacttaaaCTGCGGGCAGAGTCA | 29 | |
| 6936 common | 5′-PHOS-GTTTCATCATTGCTGGTGTG-BIO-3′ | ||
| 6936 A | 5′-tacttaaacatacaaacttactcaCGTCCTGGTGGGC | 65 | |
| 6936 G | 5′-atctcaattacaataacacacaaaCGTCCTGGTGGGC | 67 | |
Primer sequences and conditions for the PCR and LDR reactions. For the LDR of T(4414)C and C(4868)T the primers were based on the reverse sequence. Each LDR consists of three primers per SNP: two allele specific primers with anti-TAGs (small letters) matching the TAG sequence on the microsphere (Luminex xTAG microsphere number shown here) and one common primer marked with phosphate (PHOS) at the 5′ end and biotin (BIO) at the 3′ end. The sites of the SNPs are in bold and underscored
Demographic characteristics of the study participants
| Malaria patients | Non-malaria patients | Villages | |
|---|---|---|---|
| Age (years) | |||
| Mean ± SD | 2.5 ± 1.2 | 1.7 ± 1.2 | 3.8 ± 2.7 |
| Min/max | 0.2/5.2 | 0.1/5.0 | 1.0/16.2 |
| Gender (n) | |||
| Male | 54.7 % (41) | 71.2 % (47) | 53.1 % (43) |
| Female | 45.3 % (35) | 28.8 % (20) | 46.3 % (38) |
Fig. 1Soluble endothelial protein C receptor (sEPCR) levels of the total study population in the four haplotypes. Hx are defined as all haplotypes but the one given for each of the four analyses. A statistically significant difference was found with higher levels of sEPCR in carriers of at least one H3 allele compared to carriers of none. The significance level was set to P < 0.05
Distribution of the four haplotypes in hospitalized patients and village population
| Haplotype | Malaria patients | Non-malaria patients | Villages |
|---|---|---|---|
| H1 | 15.8 % (24) | 14.2 % (19) | 14.8 % (21) |
| H2 | 66.5 % (101) | 68.7 % (92) | 65.5 % (93) |
| H3 | 10.5 % (16) | 10.5 % (14) | 4.9 % (7) |
| H4 | 7.2 % (11) | 6.7 % (9) | 14.8 % (21) |
The four haplotypes were determined in all three study groups. No significant differences were found in the distribution of the haplotypes. The significance level was set to P < 0.05
Soluble endothelial protein C receptor (sEPCR) levels of hospitalized patients and village population
| sEPCR | Malaria patients | Non-malaria patients | Villages | |||
|---|---|---|---|---|---|---|
| H1 vs. Hx | 150.3 | 165.6 | 115.6 | 133.2 | 208 | 259.0 |
| H2 vs. Hx | 160.3 | 163.0 | 126.7 | 215.3 | 247.0 | 221.5 |
| H3 vs. Hx | 193.2 | 153.3 | 236.7 | 119.4 | 493.0 | 232.0 |
| H4 vs. Hx | 156.6 | 161.1 | 131.2 | 128.7 | 231.3 | 248.0 |
sEPCR levels were determined in all patients and village samples. Individuals who carry at least one H3 allele had higher levels of sEPCR than those carrying none. This was found in all three groups. Statistically significant differences were found in the general sEPCR level between all three groups. The non-malaria patient group differed from both the malaria and village groups by having lower levels of sEPCR (P = 0.001 and P < 0.001, respectively), and the malaria patient group differed from the village group by having lower levels of sEPCR (P < 0.001). The significance level was set to P < 0.05
Haplotype distribution and soluble endothelial protein C receptor (sEPCR) levels in severe and uncomplicated malaria patients
| sEPCR | Severe malaria patients | Uncomplicated malaria patients | ||
|---|---|---|---|---|
| H1 vs. Hx | 155.9 | 161.1 | 146.7 | 172.0 |
| H1 (n) | 16.4 % (17) | 14.6 % (7) | ||
| H2 vs. Hx | 161.1 | 145.2 | 146.0 | 179.1 |
| H2 (n) | 66.4 % (69) | 66.7 % (32) | ||
| H3 vs. Hx | 217.3 | 156.5 | 187.4 | 135.6 |
| H3 (n) | 7.7 % (8) | 16.7 % (8) | ||
| H4 vs. Hx | 134.1 | 161.1 | 467.8 | 153.8 |
| H4 (n) | 9.6 % (10) | 2.1 % (1) | ||
The haplotype distribution and sEPCR levels are shown for the severe and uncomplicated malaria patients. A difference in sEPCR level was seen in individuals with at least one H3 allele compared to those with none, however, this was only seen in patients with severe and not uncomplicated malaria. No differences were found in the haplotype distributions or in the general sEPCR level between the two groups. The significance level was set to P < 0.05
Fig. 2Soluble endothelial protein C receptor (sEPCR) levels in acute malaria patients and after follow-up. sEPCR levels were measured in acute ill malaria patients and after recovery (N = 28). The level of sEPCR was significantly lower (P = 0.001) during acute illness compared to the same patients after recovery. The significance level was set to P < 0.05