Literature DB >> 26620192

Random forest Granger causality for detection of effective brain connectivity using high-dimensional data.

Mohammad Shaheryar Furqan1, Mohammad Yakoob Siyal2.   

Abstract

Studies have shown that the brain functions are not localized to isolated areas and connections but rather depend on the intricate network of connections and regions inside the brain. These networks are commonly analyzed using Granger causality (GC) that utilizes the ordinary least squares (OLS) method for its standard implementation. In the past, several approaches have shown to solve the limitations of OLS by using diverse regularization systems. However, there are still some shortcomings in terms of accuracy, precision, and false discovery rate (FDR). In this paper, we are proposing a new strategy to use Random Forest as a regularization technique for computing GC that will improve these shortcomings. We have demonstrated the effectiveness of our proposed methodology by comparing the results with existing Least absolute shrinkage and selection operator (LASSO), and Elastic-Net regularized implementations of GC using simulated dataset. Later, we have used our proposed approach to map the network involved during deductive reasoning using real StarPlus dataset.

Entities:  

Keywords:  Effective connectivity; Granger causality; Random Forest

Mesh:

Year:  2015        PMID: 26620192     DOI: 10.1142/S0219635216500035

Source DB:  PubMed          Journal:  J Integr Neurosci        ISSN: 0219-6352            Impact factor:   2.117


  4 in total

1.  Elastic-Net Copula Granger Causality for Inference of Biological Networks.

Authors:  Mohammad Shaheryar Furqan; Mohammad Yakoob Siyal
Journal:  PLoS One       Date:  2016-10-28       Impact factor: 3.240

2.  A Parsimonious Granger Causality Formulation for Capturing Arbitrarily Long Multivariate Associations.

Authors:  Andrea Duggento; Gaetano Valenza; Luca Passamonti; Salvatore Nigro; Maria Giovanna Bianco; Maria Guerrisi; Riccardo Barbieri; Nicola Toschi
Journal:  Entropy (Basel)       Date:  2019-06-26       Impact factor: 2.524

3.  Inference of biological networks using Bi-directional Random Forest Granger causality.

Authors:  Mohammad Shaheryar Furqan; Mohammad Yakoob Siyal
Journal:  Springerplus       Date:  2016-04-26

4.  Genomic characterization of functional high-risk multiple myeloma patients.

Authors:  Cinnie Yentia Soekojo; Tae-Hoon Chung; Muhammad Shaheryar Furqan; Wee Joo Chng
Journal:  Blood Cancer J       Date:  2022-01-31       Impact factor: 9.812

  4 in total

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