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Literature DB >> 266187

Secondary structural complementarity between DNA and proteins.

Abstract

A model for the complex between double-stranded DNA and a beta-ribbon (a two-stranded antiparallel beta-sheet) of proteins is proposed as one of the possible modes of structural recognition between DNA and proteins. In this model, the contact occurs on the narrow groove of DNA, and the symmetry elements as well as the repeat distances of DNA and the beta-ribbon coincide, thus providing favorable complementary contacts.

Mesh：

Substances：
Proteins
DNA

Year: 1977 PMID： 266187 PMCID： PMC430798 DOI： 10.1073/pnas.74.4.1458

Source DB: PubMed Journal: Proc Natl Acad Sci U S A ISSN： 0027-8424 Impact factor: 11.205

14 in total

1. Conformational prediction and circular dichroism studies on the lac repressor.

Authors: P Y Chou; A J Adler; G D Fasman
Journal: J Mol Biol Date: 1975-07-25 Impact factor: 5.469

2. Preferential protection of the minor groove of non-operator DNA by lac repressor against methylation by dimethyl sulphate.

Authors: A M Kolchinsky; A D Mirzabekov; W Gilbert; L Li
Journal: Nucleic Acids Res Date: 1976-01 Impact factor: 16.971

3. Polymorphism of natural DNA.

Authors: S Bram; P Tougard
Journal: Nat New Biol Date: 1972-10-04

4. Stereochemistry of actinomycin binding to DNA. II. Detailed molecular model of actinomycin-DNA complex and its implications.

Authors: H M Sobell; S C Jain
Journal: J Mol Biol Date: 1972-07-14 Impact factor: 5.469

5. Stereochemistry of actinomycin binding to DNA. I. Refinement and further structural details of the actinomycin-deoxyguanosine crystalline complex.

Authors: S C Jain; H M Sobell
Journal: J Mol Biol Date: 1972-07-14 Impact factor: 5.469

9. A computer aided oligonucleotide analysis provides a model sequence for RNA polymerase-promoter recognition in E.coli.

Authors: G E Scherer; M D Walkinshaw; S Arnott
Journal: Nucleic Acids Res Date: 1978-10 Impact factor: 16.971

10. The Aspergillus nidulans abaA gene encodes a transcriptional activator that acts as a genetic switch to control development.

Authors: A Andrianopoulos; W E Timberlake
Journal: Mol Cell Biol Date: 1994-04 Impact factor: 4.272

Secondary structural complementarity between DNA and proteins.

1. Conformational prediction and circular dichroism studies on the lac repressor.

2. Preferential protection of the minor groove of non-operator DNA by lac repressor against methylation by dimethyl sulphate.

3. Polymorphism of natural DNA.

4. Stereochemistry of actinomycin binding to DNA. II. Detailed molecular model of actinomycin-DNA complex and its implications.

5. Stereochemistry of actinomycin binding to DNA. I. Refinement and further structural details of the actinomycin-deoxyguanosine crystalline complex.

6. Conformation of twisted beta-pleated sheets in proteins.

7. Lac repressor-operator interaction. I. Equilibrium studies.

Review 8. Conformation of polypeptides and proteins.

9. Optimised parameters for A-DNA and B-DNA.

10. Refinement of bond angles of an alpha-helix.

1. The FLP protein contacts both major and minor grooves of its recognition target sequence.

2. Profile of George M. Church.

3. Time-dependent DNA condensation induced by amyloid beta-peptide.

Review 4. Structural aspects of protein-DNA recognition.

5. Aminoacylating urzymes challenge the RNA world hypothesis.

6. WRKY gene family evolution in Arabidopsis thaliana.

7. Possibility of nonkinked packing of DNA in chromatin.

8. Histone packing in the nucleosome core particle of chromatin.

9. A computer aided oligonucleotide analysis provides a model sequence for RNA polymerase-promoter recognition in E.coli.

10. The Aspergillus nidulans abaA gene encodes a transcriptional activator that acts as a genetic switch to control development.