Literature DB >> 266173

Molecular description of dioxygen bonding in hemoglobin.

B D Olafson, W A Goddard.   

Abstract

From ab initio quality calculations on model systems, we conclude that in unliganded Fe-porphyrin the FE lies in the plane for both the high-spin (q) and intermediate-spin (t) states. Thus, the high-spin d6 Fe is not too big to fit into the porphyrin plane (as often suggested). We find the q state lower for a porphyrin hole radius greater than 1.94 A and the t state lower for smaller sizes. For the five-coordinate complex including an axial nitrogenous ligand [a model for myoglobin (Mb) and hemoglobin (Hb)], we find the ground state to be q with the Fe 0.3 A out of the plane (recent x-ray data on deoxy Mb suggests about 0.4 A). The origin of this out-of-plane displacement is the nonbonded repulsions between the axial ligand and porphyrin nitrogen orbitals. Pushing the Fe of the five-coordinate complex into the plane does not lead to a stable low-spin state (as usually suggested), the q and t states being the low-lying states. Bonding the O2 to form the six-coordinate complex stabilizes the t form of the Mb model, leading to a singlet state of MbO2 with Fe in the plane. (It has often been suggested that the Fe of MbO2 and HbO2 is low-spin Fe2+; however, we find this not to be the case.) The bonding in the MbO2 model confirms the ozone model of the bonding, leading to a structure consistent with the Pauling model (our calculated FeOO bond angle is 119 degrees). The total charge transfer to the O2 is 0.10 electron, in disagreement with the Weiss model. Molecular orbital calculations (Hartree-Fock) incorrectly lead to septet ground state (S = 3) for the MbO2 model. The implications for the cooperative O2 binding in hemoglobin and protein modifications of the energetics of the active site are considered. Use of our calculated force constants for displacement of Fe perpendicular to the heme plane suggests that the movement of the Fe upon a change in the quaternary structure from the T to the R form is only about 0.04 A toward the heme plane.

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Year:  1977        PMID: 266173      PMCID: PMC430737          DOI: 10.1073/pnas.74.4.1315

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  15 in total

1.  NATURE OF THE IRON-OXYGEN BOND IN OXYHAEMOGLOBIN.

Authors:  J J WEISS
Journal:  Nature       Date:  1964-04-04       Impact factor: 49.962

2.  Synthesis, stereochemistry, and structure-related properties of alpha, beta, gamma, delta-tetraphenylporphinatoiron(II).

Authors:  J P Collman; J L Hoard; N Kim; G Lang; C A Reed
Journal:  J Am Chem Soc       Date:  1975-05-14       Impact factor: 15.419

3.  The Magnetic Properties and Structure of Hemoglobin, Oxyhemoglobin and Carbonmonoxyhemoglobin.

Authors:  L Pauling; C D Coryell
Journal:  Proc Natl Acad Sci U S A       Date:  1936-04       Impact factor: 11.205

4.  The absence of "heme-heme" interactions in hemoglobin.

Authors:  R G Shulman; S Ogawa; K Wüthrich; T Yamane; J Peisach; W E Blumberg
Journal:  Science       Date:  1969-07-18       Impact factor: 47.728

5.  Stereochemical trigger for initiating cooperative interaction of the subunits during the oxygenation of cobaltohemoglobin.

Authors:  J L Hoard; W R Scheidt
Journal:  Proc Natl Acad Sci U S A       Date:  1973-12       Impact factor: 11.205

6.  Influence of globin structure on the state of the heme. I. Human deoxyhemoglobin.

Authors:  M F Perutz; J E Ladner; S R Simon; C Ho
Journal:  Biochemistry       Date:  1974-05-07       Impact factor: 3.162

7.  Relation between structure, co-operativity and spectra in a model of hemoglobin action.

Authors:  J J Hopfield
Journal:  J Mol Biol       Date:  1973-06-25       Impact factor: 5.469

8.  Stereochemistry of cooperative effects in haemoglobin.

Authors:  M F Perutz
Journal:  Nature       Date:  1970-11-21       Impact factor: 49.962

9.  Structure of an iron(II) dioxygen complex; a model for oxygen carrying hemeproteins.

Authors:  J P Collman; R R Gagne; C A Reed; W T Robinson; G A Rodley
Journal:  Proc Natl Acad Sci U S A       Date:  1974-04       Impact factor: 11.205

10.  Stereochemistry of hemes and other metalloporphyrins.

Authors:  J L Hoard
Journal:  Science       Date:  1971-12-24       Impact factor: 47.728

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  15 in total

1.  Room-temperature magnetic properties of oxy- and carbonmonoxyhemoglobin.

Authors:  M Cerdonio; A Congiu-Castellano; L Calabrese; S Morante; B Pispisa; S Vitale
Journal:  Proc Natl Acad Sci U S A       Date:  1978-10       Impact factor: 11.205

2.  Quantum chemical DFT study of the interaction between molecular oxygen and FeN₄ complexes, and effect of the macrocyclic ligand.

Authors:  Adilson Luís Pereira Silva; Luciano Farias de Almeida; Aldaléa Lopes Brandes Marques; Hawbertt Rocha Costa; Auro Atsushi Tanaka; Albérico Borges Ferreira da Silva; Jaldyr de Jesus Gomes Varela
Journal:  J Mol Model       Date:  2014-02-25       Impact factor: 1.810

3.  Kinetics of carboxymyoglobin and oxymyoglobin studied by picosecond spectroscopy.

Authors:  W G Eisert; E O Degenkolb; L J Noe; P M Rentzepis
Journal:  Biophys J       Date:  1979-03       Impact factor: 4.033

4.  Magnetic properties and structure of oxyhemoglobin.

Authors:  L Pauling
Journal:  Proc Natl Acad Sci U S A       Date:  1977-07       Impact factor: 11.205

5.  Mössbauer spectroscopic studies of hemoglobin and its isolated subunits.

Authors:  G R Hoy; D C Cook; R L Berger; F K Friedman
Journal:  Biophys J       Date:  1986-05       Impact factor: 4.033

6.  Fe L-edge X-ray absorption spectroscopy of low-spin heme relative to non-heme Fe complexes: delocalization of Fe d-electrons into the porphyrin ligand.

Authors:  Rosalie K Hocking; Erik C Wasinger; Yi-Long Yan; Frank M F Degroot; F Ann Walker; Keith O Hodgson; Britt Hedman; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2007-01-10       Impact factor: 15.419

7.  The effect of iron displacement out of the porphyrin plane on the resonance Raman spectra of heme proteins and iron porphyrins.

Authors:  S S Stavrov
Journal:  Biophys J       Date:  1993-11       Impact factor: 4.033

8.  Picosecond photodissociation and subsequent recombination processes in carboxyhemoglobin, carboxymyoglobin, and oxymyoglobin.

Authors:  L J Noe; W G Eisert; P M Rentzepis
Journal:  Biophys J       Date:  1978-10       Impact factor: 4.033

9.  Geminate recombination of O2 and hemoglobin.

Authors:  D A Chernoff; R M Hochstrasser; A W Steele
Journal:  Proc Natl Acad Sci U S A       Date:  1980-10       Impact factor: 11.205

10.  Structural heterogeneity of the Fe(2+)-N epsilon (HisF8) bond in various hemoglobin and myoglobin derivatives probed by the Raman-active iron histidine stretching mode.

Authors:  H Gilch; R Schweitzer-Stenner; W Dreybrodt
Journal:  Biophys J       Date:  1993-10       Impact factor: 4.033

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