Literature DB >> 26615474

Highly efficient automated extraction of DNA from old and contemporary skeletal remains.

Irena Zupanič Pajnič1, Magdalena Debska2, Barbara Gornjak Pogorelc3, Katja Vodopivec Mohorčič3, Jože Balažic3, Tomaž Zupanc3, Borut Štefanič3, Ksenija Geršak4.   

Abstract

We optimised the automated extraction of DNA from old and contemporary skeletal remains using the AutoMate Express system and the PrepFiler BTA kit. 24 Contemporary and 25 old skeletal remains from WWII were analysed. For each skeleton, extraction using only 0.05 g of powder was performed according to the manufacturer's recommendations (no demineralisation - ND method). Since only 32% of full profiles were obtained from aged and 58% from contemporary casework skeletons, the extraction protocol was modified to acquire higher quality DNA and genomic DNA was obtained after full demineralisation (FD method). The nuclear DNA of the samples was quantified using the Investigator Quantiplex kit and STR typing was performed using the NGM kit to evaluate the performance of tested extraction methods. In the aged DNA samples, 64% of full profiles were obtained using the FD method. For the contemporary skeletal remains the performance of the ND method was closer to the FD method compared to the old skeletons, giving 58% of full profiles with the ND method and 71% of full profiles using the FD method. The extraction of DNA from only 0.05 g of bone or tooth powder using the AutoMate Express has proven highly successful in the recovery of DNA from old and contemporary skeletons, especially with the modified FD method. We believe that the results obtained will contribute to the possibilities of using automated devices for extracting DNA from skeletal remains, which would shorten the procedures for obtaining high-quality DNA from skeletons in forensic laboratories.
Copyright © 2015 Elsevier Ltd and Faculty of Forensic and Legal Medicine. All rights reserved.

Keywords:  Bones; DNA extraction; Missing person identification; Second World War; Skeletal remains; Teeth

Mesh:

Substances:

Year:  2015        PMID: 26615474     DOI: 10.1016/j.jflm.2015.11.001

Source DB:  PubMed          Journal:  J Forensic Leg Med        ISSN: 1752-928X            Impact factor:   1.614


  3 in total

1.  A novel, 4-h DNA extraction method for STR typing of casework bone samples.

Authors:  Laila Hasap; Wilaiwan Chotigeat; Jintana Pradutkanchana; Uraporn Vongvatcharanon; Thitika Kitpipit; Phuvadol Thanakiatkrai
Journal:  Int J Legal Med       Date:  2020-01-02       Impact factor: 2.686

2.  Rapidly mutating Y-STR analyses of compromised forensic samples.

Authors:  Rashed Alghafri; Irena Zupanič Pajnič; Tomaž Zupanc; Jože Balažic; Pankaj Shrivastava
Journal:  Int J Legal Med       Date:  2017-05-02       Impact factor: 2.686

Review 3.  Microbial Degradation of Forensic Samples of Biological Origin: Potential Threat to Human DNA Typing.

Authors:  Hirak Ranjan Dash; Surajit Das
Journal:  Mol Biotechnol       Date:  2018-02       Impact factor: 2.695

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.