Literature DB >> 26613149

Absorption Spectrum of the Green Fluorescent Protein Chromophore: A Difficult Case for ab Initio Methods?

Claudia Filippi1, Maurizio Zaccheddu1, Francesco Buda1.   

Abstract

We perform a thorough comparative investigation of the excitation energies of the anionic and neutral forms of the green fluorescent protein (GFP) chromophore in the gas phase using a variety of first-principle theoretical approaches commonly used to access excited state properties of photoactive molecules. These include time-dependent density functional theory (TDDFT), complete-active-space second-order perturbation theory (CASPT2), equation-of-motion coupled cluster (EOM-CC), and quantum Monte Carlo (QMC) methods. We find that all approaches give roughly the same vertical excitation for the anionic form, while TDDFT predicts an excitation for the neutral chromophore significantly lower than the highly correlated methods. Our findings support the picture emerging from the extrapolation of the Kamlet-Taft fit of absorption experimental data in solution and indicate that the protein gives rise to a considerable bathochromic shift with respect to vacuum. These results also open some questions on the interpretation of photodestruction spectroscopy experiments in the gas phase as well as on the accuracy of previous theoretical calculations in the more complex protein environment.

Year:  2009        PMID: 26613149     DOI: 10.1021/ct900227j

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  4 in total

1.  On the origin of fluorescence in bacteriophytochrome infrared fluorescent proteins.

Authors:  Alex A Samma; Chelsea K Johnson; Shuang Song; Samuel Alvarez; Marc Zimmer
Journal:  J Phys Chem B       Date:  2010-11-03       Impact factor: 2.991

2.  Introduction to theory/modeling methods in photosynthesis.

Authors:  Francesco Buda
Journal:  Photosynth Res       Date:  2009 Nov-Dec       Impact factor: 3.573

3.  Molecular mechanism of a green-shifted, pH-dependent red fluorescent protein mKate variant.

Authors:  Qi Wang; Laura J Byrnes; Bo Shui; Ute F Röhrig; Avtar Singh; Dmitriy M Chudakov; Sergey Lukyanov; Warren R Zipfel; Michael I Kotlikoff; Holger Sondermann
Journal:  PLoS One       Date:  2011-08-22       Impact factor: 3.240

4.  Two-Photon Absorption Cross-Sections in Fluorescent Proteins Containing Non-canonical Chromophores Using Polarizable QM/MM.

Authors:  Maria Rossano-Tapia; Jógvan Magnus Haugaard Olsen; Alex Brown
Journal:  Front Mol Biosci       Date:  2020-06-12
  4 in total

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