Literature DB >> 26612463

Integrated analysis of the genomic instability of PTEN in clinically insignificant and significant prostate cancer.

Stephen J Murphy1,2, Robert J Karnes3, Farhad Kosari1,2, B Edgardo R Parilla Castellar4, Benjamin R Kipp4, Sarah H Johnson1,2, Simone Terra1,2, Faye R Harris1,2, Geoffrey C Halling1,2, Janet L Schaefer Klein1,2, Aqsa Nasir1,2, Eric Bergstrahl5, Laureano J Rangel5, William R Sukov4, George Vasmatzis1,2, John C Cheville1,4.   

Abstract

Patients with clinically insignificant prostate cancer remain a major over-treated population. PTEN loss is one of the most recurrent alterations in prostate cancer associated with an aggressive phenotype, however, the occurrence of PTEN loss in insignificant prostate cancer has not been reported and its role in the separation of insignificant from significant prostate cancer is unclear. An integrated analysis of PTEN loss was, therefore, performed for structural variations, point mutations and protein expression in clinically insignificant (48 cases) and significant (76 cases) prostate cancers treated by radical prostatectomy. Whole-genome mate pair sequencing was performed on tumor cells isolated by laser capture microdissection to characterize PTEN structural alterations. Fluorescence in situ hybridization probes were constructed from the sequencing data to detect the spectrum of these PTEN alterations. PTEN loss by mate pair sequencing and fluorescence in situ hybridization occurred in 2% of insignificant, 13% of large volume Gleason score 6, and 46% of Gleason score 7 and higher cancers. In Gleason score 7 cancers with PTEN loss, PTEN alterations were detected in both Gleason pattern 3 and 4 in 57% of cases by mate pair sequencing, 75% by in situ hybridization and 86% by immunohistochemistry. PTEN loss by sequencing was strongly associated with TMPRSS2-ERG fusion, biochemical recurrence, PTEN loss by in situ hybridization and protein loss by immunohistochemistry. The complex nature of PTEN rearrangements was unveiled by sequencing, detailing the heterogeneous events leading to homozygous loss of PTEN. PTEN point mutation was present in 5% of clinically significant tumors and not in insignificant cancer or high-grade prostatic intraepithelial neoplasia. PTEN loss is infrequent in clinically insignificant prostate cancer, and is associated with higher grade tumors. Detection of PTEN loss in Gleason score 6 cancer in a needle biopsy specimen indicates a higher likelihood of clinically significant prostate cancer.

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Year:  2015        PMID: 26612463     DOI: 10.1038/modpathol.2015.136

Source DB:  PubMed          Journal:  Mod Pathol        ISSN: 0893-3952            Impact factor:   7.842


  40 in total

1.  Perineural invasion and MIB-1 positivity in addition to Gleason score are significant preoperative predictors of progression after radical retropubic prostatectomy for prostate cancer.

Authors:  Thomas J Sebo; John C Cheville; Darren L Riehle; Christine M Lohse; V Shane Pankratz; Robert P Myers; Michael L Blute; Horst Zincke
Journal:  Am J Surg Pathol       Date:  2002-04       Impact factor: 6.394

2.  Genomic deletion of PTEN is associated with tumor progression and early PSA recurrence in ERG fusion-positive and fusion-negative prostate cancer.

Authors:  Antje Krohn; Tobias Diedler; Lia Burkhardt; Pascale-Sophie Mayer; Colin De Silva; Marie Meyer-Kornblum; Darja Kötschau; Pierre Tennstedt; Joseph Huang; Clarissa Gerhäuser; Malte Mader; Stefan Kurtz; Hüseyin Sirma; Fred Saad; Thomas Steuber; Markus Graefen; Christoph Plass; Guido Sauter; Ronald Simon; Sarah Minner; Thorsten Schlomm
Journal:  Am J Pathol       Date:  2012-06-13       Impact factor: 4.307

Review 3.  Molecular genetics of prostate cancer: new prospects for old challenges.

Authors:  Michael M Shen; Cory Abate-Shen
Journal:  Genes Dev       Date:  2010-09-15       Impact factor: 11.361

4.  Subtle variations in Pten dose determine cancer susceptibility.

Authors:  Andrea Alimonti; Arkaitz Carracedo; John G Clohessy; Lloyd C Trotman; Caterina Nardella; Ainara Egia; Leonardo Salmena; Katia Sampieri; William J Haveman; Edi Brogi; Andrea L Richardson; Jiangwen Zhang; Pier Paolo Pandolfi
Journal:  Nat Genet       Date:  2010-04-18       Impact factor: 38.330

5.  PTEN genomic deletion is associated with p-Akt and AR signalling in poorer outcome, hormone refractory prostate cancer.

Authors:  Kanishka Sircar; Maisa Yoshimoto; Federico A Monzon; Ismael H Koumakpayi; Ruth L Katz; Abha Khanna; Karla Alvarez; Guanyong Chen; Andrew D Darnel; Armen G Aprikian; Fred Saad; Tarek A Bismar; Jeremy A Squire
Journal:  J Pathol       Date:  2009-08       Impact factor: 7.996

6.  TMPRSS2-ERG and PTEN loss in prostate cancer.

Authors:  Jeremy A Squire
Journal:  Nat Genet       Date:  2009-05       Impact factor: 38.330

7.  Pten is essential for embryonic development and tumour suppression.

Authors:  A Di Cristofano; B Pesce; C Cordon-Cardo; P P Pandolfi
Journal:  Nat Genet       Date:  1998-08       Impact factor: 38.330

8.  Absence of TMPRSS2:ERG fusions and PTEN losses in prostate cancer is associated with a favorable outcome.

Authors:  Maisa Yoshimoto; Anthony M Joshua; Isabela W Cunha; Renata A Coudry; Francisco P Fonseca; Olga Ludkovski; Maria Zielenska; Fernando A Soares; Jeremy A Squire
Journal:  Mod Pathol       Date:  2008-05-23       Impact factor: 7.842

9.  Molecular characterisation of ERG, ETV1 and PTEN gene loci identifies patients at low and high risk of death from prostate cancer.

Authors:  A H M Reid; G Attard; L Ambroisine; G Fisher; G Kovacs; D Brewer; J Clark; P Flohr; S Edwards; D M Berney; C S Foster; A Fletcher; W L Gerald; H Møller; V E Reuter; P T Scardino; J Cuzick; J S de Bono; C S Cooper
Journal:  Br J Cancer       Date:  2010-01-26       Impact factor: 7.640

10.  FISH analysis of 107 prostate cancers shows that PTEN genomic deletion is associated with poor clinical outcome.

Authors:  M Yoshimoto; I W Cunha; R A Coudry; F P Fonseca; C H Torres; F A Soares; J A Squire
Journal:  Br J Cancer       Date:  2007-08-14       Impact factor: 7.640

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  11 in total

1.  Mutation Profiling Indicates High Grade Prostatic Intraepithelial Neoplasia as Distant Precursors of Adjacent Invasive Prostatic Adenocarcinoma.

Authors:  Sean J Gerrin; Adam G Sowalsky; Steven P Balk; Huihui Ye
Journal:  Prostate       Date:  2016-06-08       Impact factor: 4.104

Review 2.  Clinical implications of PTEN loss in prostate cancer.

Authors:  Tamara Jamaspishvili; David M Berman; Ashley E Ross; Howard I Scher; Angelo M De Marzo; Jeremy A Squire; Tamara L Lotan
Journal:  Nat Rev Urol       Date:  2018-02-20       Impact factor: 14.432

3.  Distinct subtypes of genomic PTEN deletion size influence the landscape of aneuploidy and outcome in prostate cancer.

Authors:  Thiago Vidotto; Daniel Guimarães Tiezzi; Jeremy A Squire
Journal:  Mol Cytogenet       Date:  2018-01-03       Impact factor: 2.009

Review 4.  Epigenetic Signature: A New Player as Predictor of Clinically Significant Prostate Cancer (PCa) in Patients on Active Surveillance (AS).

Authors:  Matteo Ferro; Paola Ungaro; Amelia Cimmino; Giuseppe Lucarelli; Gian Maria Busetto; Francesco Cantiello; Rocco Damiano; Daniela Terracciano
Journal:  Int J Mol Sci       Date:  2017-05-27       Impact factor: 5.923

5.  Withaferin A Inhibits Prostate Carcinogenesis in a PTEN-deficient Mouse Model of Prostate Cancer.

Authors:  Jim Moselhy; Suman Suman; Mohammed Alghamdi; Balaji Chandarasekharan; Trinath P Das; Alatassi Houda; Murali Ankem; Chendil Damodaran
Journal:  Neoplasia       Date:  2017-05-07       Impact factor: 5.715

Review 6.  Incorporation of tissue-based genomic biomarkers into localized prostate cancer clinics.

Authors:  Marco Moschini; Martin Spahn; Agostino Mattei; John Cheville; R Jeffrey Karnes
Journal:  BMC Med       Date:  2016-04-04       Impact factor: 8.775

7.  Enhanced mRNA FISH with compact quantum dots.

Authors:  Yang Liu; Phuong Le; Sung Jun Lim; Liang Ma; Suresh Sarkar; Zhiyuan Han; Stephen J Murphy; Farhad Kosari; George Vasmatzis; John C Cheville; Andrew M Smith
Journal:  Nat Commun       Date:  2018-10-26       Impact factor: 14.919

8.  The Role of Immunohistochemical Analysis as a Tool for the Diagnosis, Prognostic Evaluation and Treatment of Prostate Cancer: A Systematic Review of the Literature.

Authors:  Arie Carneiro; Álan Roger Gomes Barbosa; Lucas Seiti Takemura; Paulo Priante Kayano; Natasha Kouvaleski Saviano Moran; Carolina Ko Chen; Marcelo Langer Wroclawski; Gustavo Caserta Lemos; Isabela Werneck da Cunha; Marcos Takeo Obara; Marcos Tobias-Machado; Adam G Sowalsky; Bianca Bianco
Journal:  Front Oncol       Date:  2018-09-18       Impact factor: 6.244

9.  Development of an autophagy-related gene expression signature for prognosis prediction in prostate cancer patients.

Authors:  Daixing Hu; Li Jiang; Shengjun Luo; Xin Zhao; Hao Hu; Guozhi Zhao; Wei Tang
Journal:  J Transl Med       Date:  2020-04-07       Impact factor: 5.531

10.  Identification and validation of mRNA 3'untranslated regions of DNMT3B and TET3 as novel competing endogenous RNAs of the tumor suppressor PTEN.

Authors:  Kenneth Anthony R Roquid; Krizelle Mae M Alcantara; Reynaldo L Garcia
Journal:  Int J Oncol       Date:  2019-12-20       Impact factor: 5.650

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