Literature DB >> 26610137

On the Calculation of the Dielectric Permittivity and Relaxation of Molecular Models in the Liquid Phase.

Sereina Riniker1, Anna-Pitschna E Kunz1, Wilfred F van Gunsteren1.   

Abstract

Methodology to compute the relative static dielectric permittivity and dielectric relaxation time of molecular liquids is reviewed and explicit formulas are given for the external field method in the case of simulations using a spherical cutoff, in which the background dielectric permittivity (εcs) can be larger than one, in combination with a Poisson-Boltzmann reaction-field approximation for long-range electrostatic interactions. The external field method is simple to implement and computationally efficient. It is particularly suitable for polarizable molecular models with zero permanent dipole moment and for coarse-grained molecular models with εcs > 1. The dielectric permittivities and relaxation times of water (H2O), dimethylsulfoxide (DMSO), methanol (MeOH), and chloroform (CHCl3), which range from 2 to 80 and from 5 ps to 50 ps, respectively, were calculated as an illustration.

Entities:  

Year:  2011        PMID: 26610137     DOI: 10.1021/ct100610v

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  6 in total

1.  Replica-Exchange Enveloping Distribution Sampling Using Generalized AMBER Force-Field Topologies: Application to Relative Hydration Free-Energy Calculations for Large Sets of Molecules.

Authors:  Salomé R Rieder; Benjamin Ries; Kay Schaller; Candide Champion; Emilia P Barros; Philippe H Hünenberger; Sereina Riniker
Journal:  J Chem Inf Model       Date:  2022-06-08       Impact factor: 6.162

2.  An ab-initio computational method to determine dielectric properties of biological materials.

Authors:  Chathurika D Abeyrathne; Malka N Halgamuge; Peter M Farrell; Efstratios Skafidas
Journal:  Sci Rep       Date:  2013       Impact factor: 4.379

3.  A QM/MM Derived Polarizable Water Model for Molecular Simulation.

Authors:  Koen M Visscher; William C Swope; Daan P Geerke
Journal:  Molecules       Date:  2018-11-29       Impact factor: 4.411

4.  Multiscale modeling shows that dielectric differences make NaV channels faster than KV channels.

Authors:  Luigi Catacuzzeno; Luigi Sforna; Fabio Franciolini; Robert S Eisenberg
Journal:  J Gen Physiol       Date:  2021-02-01       Impact factor: 4.086

5.  Connecting the conformational behavior of cyclic octadepsipeptides with their ionophoric property and membrane permeability.

Authors:  Thomas Stadelmann; Govindan Subramanian; Sanjay Menon; Chad E Townsend; R Scott Lokey; Marc-Olivier Ebert; Sereina Riniker
Journal:  Org Biomol Chem       Date:  2020-09-23       Impact factor: 3.876

6.  How Ethylene Glycol Chains Enhance the Dielectric Constant of Organic Semiconductors: Molecular Origin and Frequency Dependence.

Authors:  Selim Sami; Riccardo Alessandri; Ria Broer; Remco W A Havenith
Journal:  ACS Appl Mater Interfaces       Date:  2020-04-01       Impact factor: 9.229

  6 in total

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