Literature DB >> 26610018

Structure Prediction of Bis(amino acidato)copper(II) Complexes with a New Force Field for Molecular Modeling.

Jasmina Sabolović1, Vjeran Gomzi1.   

Abstract

This article presents a new force field whose parameterization was based on experimental crystal data and quantum chemically obtained vacuum structures of a series of copper(II) complexes with aliphatic α-amino acids and their N-alkyl derivatives, along with the SPC/E water model. The ability of the new force field to reproduce and predict the structural properties of the copper(II) complexes in the gas phase, in simulated crystalline surroundings, and solvated in water is examined. Molecular dynamics (MD) simulations with the new force field yielded time-average structural coordinates of bis(glycinato)copper(II) [the only one of 25 modeled bis(amino acidato)copper(II) systems with published experimental structural data in aqueous solution at room temperature] within the experimental error values. The study of the cis-trans isomerization of bis(glycinato)copper(II) in aqueous medium at 300 K using the quantum chemical polarized continuum model revealed a small energy difference (5 kJ mol(-1)) between the solvated cis and trans minima, in line with the MD energy estimations. The new force field proved promising in predicting the association of the complexes in aqueous solution and formation of a nucleus of crystallization.

Entities:  

Year:  2009        PMID: 26610018     DOI: 10.1021/ct9000203

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  2 in total

1.  Calculating the geometry and Raman spectrum of physiological bis(L-histidinato)copper(II): an assessment of DFT functionals for aqueous and isolated systems.

Authors:  Jasmina Sabolović; Michael Ramek; Marijana Marković
Journal:  J Mol Model       Date:  2017-09-26       Impact factor: 1.810

2.  Conformational Analyses of Physiological Binary and Ternary Copper(II) Complexes with l-Asparagine and l-Histidine; Study of Tridentate Binding of Copper(II) in Aqueous Solution.

Authors:  Michael Ramek; Marijana Marković; Ilina Mutapčić; Jelena Pejić; Anne-Marie Kelterer; Jasmina Sabolović
Journal:  ChemistryOpen       Date:  2019-07-03       Impact factor: 2.911

  2 in total

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