| Literature DB >> 26609833 |
Jan Kubelka1, Petr Bouř1.
Abstract
Modern ab initio and multiscale methods enable the simulation of vibrational properties of very large molecules. Within the harmonic approximation, the traditional generation of the spectra based on the force field diagonalization can become inefficient due to the excessive demands on computer time and memory. The present study proposes to avoid completely the matrix diagonalization with a direct generation of the spectral shapes. For infrared absorption (IR) and vibrational circular dichroism (VCD) electric and magnetic dipole moments are propagated in a fictitious time and spectral intensities are obtained by Fourier transformation. The algorithm scales quasi-linearly, and for model polypeptide molecules the method was found numerically stable and faithfully reproduced exact transition frequencies and relative intensities.Entities:
Year: 2009 PMID: 26609833 DOI: 10.1021/ct800298n
Source DB: PubMed Journal: J Chem Theory Comput ISSN: 1549-9618 Impact factor: 6.006