| Literature DB >> 26608987 |
Jing-Cong Zhuang, Lei Wu, Mei-Zhen Qian, Ping-Ping Cai, Qi-Bing Liu, Gui-Xian Zhao, Zhen-Xin Li, Zhi-Ying Wu1.
Abstract
BACKGROUND: Neuromyelitis optica (NMO) and multiple sclerosis (MS) are autoimmune demyelinating diseases of the central nerve system. Interleukin-7 (IL-7) and interleukin-7 receptor alpha (IL-7Rα) were proved to be important in the pathogenesis of both diseases because of the roles they played in the differentiations of autoimmune lymphocytes. The variants of both genes had been identified to be associated with MS susceptibility in Caucasian, Japanese and Korean populations. However, the association of these variants with NMO and MS has not been well studied in Chinese Southeastern Han population. Here, we aimed to evaluate the association of six IL-7 variants (rs1520333, rs1545298, rs4739140, rs6993386, rs7816065, and rs2887502) and one variant of IL-7RA (rs6897932) with NMO and MS among Chinese Han population in southeastern China.Entities:
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Year: 2015 PMID: 26608987 PMCID: PMC4795263 DOI: 10.4103/0366-6999.169093
Source DB: PubMed Journal: Chin Med J (Engl) ISSN: 0366-6999 Impact factor: 2.628
Primer sequences for analysis of IL7 and IL7RA variants
| Variants | PCR primers | MassEXTEND primers | PCR primers for sanger sequencing |
|---|---|---|---|
| rs6993386 | Forward: ACGTTGGATGTCAAAAGATGGCCATCTAAG | GATGGCCATCTAAGTTTCTTT | Forward: 5’-TGCCTAGCTGTGATTTGTTTC3’ |
| Reverse: ACGTTGGATGCCCTATCAGAAGAATGGCTC | Reverse: 5’-CAGTTATTAATTCATCGACCT3’ | ||
| rs4739140 | Forward: ACGTTGGATGCAGTTCTCTTCCTCAGTACC | TCCTCAGTACCTCTTTAGT | Forward: 5’-GAAGCAGGGACCTTTGTGGAA3’ |
| Reverse: ACGTTGGATGACCACAGAAAAGTCTGAATG | Reverse: 5’-ATTCTTCTCGATTTTCAGT3’ | ||
| rs2887502 | Forward: ACGTTGGATGTCTGACCATTGTTGCTCAGG | AGGGTAGTTCAGTACTTC | Forward: 5’-GTGTTGAGCATGAGGAGGGA3’ |
| Reverse: ACGTTGGATGAGGAGAGAGACTAAGAGCAG | Reverse: 5’-AGAGACAGAGGTTCTGGCTGA3’ | ||
| rs1545298 | Forward: ACGTTGGATGGGTAAAACTAGGCCATGAGG | TTCCTGTGTGGCTTAA | Forward: 5’-TCAAGTGGGAGGAAAGGGAAA3’ |
| Reverse: ACGTTGGATGGATCAGGAATACTCACCTGC | Reverse: 5’-GTTGAGAAATCCAAGATCAAG3’ | ||
| rs7816065 | Forward: ACGTTGGATGAGGCATAAAGGCACACTGAC | GTTAGCTGTGTTTTAGCAAA | Forward: 5’-GGTAGCTGAAACGTAGGCCTG3’ |
| Reverse: ACGTTGGATGAAGTGTAGAGCAAGTCTGCC | Reverse: 5’-CTAATGAAATCTGTCCAAAGG3’ | ||
| rs1520333 | Forward: ACGTTGGATGAGAGGTGGTATGGGTGTATC | CAGCCCACTGGAACCAAAG | Forward: 5’-TCAAAAAAGAAGTGCGTG3’ |
| Reverse: ACGTTGGATGTGGGCAAGCAGGTAAGAAAG | Reverse: 5’-GTGGTTGCTAAAAATGAAGTC3’ | ||
| rs6897932 | Forward: ACGTTGGATGCAGAGCGACAGAGAAAAAAC | CAAAAAACTCAAAATGCTGATG | Forward: 5’-CAAAGCACCCTGAGACCCTACC3’ |
| Reverse: ACGTTGGATGACTGAATGCTCACCACAATC | Reverse: 5’-CAGCGTTTGCCTAATGTCCAGT3’ |
PCR: Polymerase chain reaction.
Characteristics of all Chinese Han participants in this study
| Characteristics | MS ( | NMO ( | Healthy controls ( |
|---|---|---|---|
| Male/female, | 66/93 | 24/139 | 248/220 |
| Age (years), mean ± SD (range) | 39.30 ± 13.69 (9–73) | 43.42 ± 13.30 (13–77) | 32.90 ± 13.64 (16–85) |
| Onset age (years), mean ± SD | 31.82 ± 13.02 | 36.26 ± 13.72 | NA |
| Duration of disease (years), mean ± SD | 6.96 ± 5.90 | 6.89 ± 7.29 | NA |
| AQP4-Ab positive, | 0 (0) | 57 (34.97) | NA |
MS: Multiple sclerosis; NMO: Neuromyelitis optica; AQP4-Ab: Antiaquaporin-4 antibodies; NA: Not applicable; SD: Standard deviation.
Figure 1The DNA sequence chromatograms of these seven variants. The upper and the bottom panels indicate the homozygous genotypes, whereas the heterozygous genotype is shown in the middle one.
Hardy–Weinberg equilibrium tests for all Chinese Han participants in this study
| Variants | MS ( | NMO ( | Healthy controls ( | ||||||
|---|---|---|---|---|---|---|---|---|---|
| rs1520333 | 2.547 | 0.110 | 0.071 | 0.790 | 1.892 | 0.169 | |||
| GG | 46 (50.94) | 44 (44.85) | 130 (122.56) | ||||||
| GA | 88 (78.11) | 83 (81.30) | 219 (233.87) | ||||||
| AA | 25 (29.94) | 36 (36.85) | 119 (111.56) | ||||||
| rs1545298 | 0.006 | 0.937 | 0.122 | 0.727 | 0.784 | 0.376 | |||
| CC | 10 (9.81) | 11 (11.88) | 32 (35.83) | ||||||
| CT | 59 (59.37) | 66 (64.25) | 195 (187.33) | ||||||
| TT | 90 (89.81) | 86 (86.88) | 241 (244.83) | ||||||
| rs4739140 | 2.929 | 0.087 | 2.367 | 0.124 | 0.066 | 0.797 | |||
| AA | 0 (2.27) | 6 (3.53) | 6 (6.58) | ||||||
| AG | 38 (33.46) | 36 (40.93) | 99 (97.84) | ||||||
| GG | 121 (123.27) | 121 (118.53) | 363 (363.58) | ||||||
| rs6993386 | 3.089 | 0.079 | 0.077 | 0.782 | 0.143 | 0.705 | |||
| CC | 15 (20.08) | 22 (22.83) | 70 (71.95) | ||||||
| CT | 83 (72.85) | 78 (76.34) | 227 (223.10) | ||||||
| TT | 61 (66.08) | 63 (66.83) | 171 (172.95) | ||||||
| rs7816065 | 0.005 | 0.943 | 0.298 | 0.585 | 0.041 | 0.840 | |||
| CC | 14 (14.19) | 17 (18.56) | 55 (54.02) | ||||||
| CT | 67 (66.62) | 76 (72,88) | 208 (209.96) | ||||||
| TT | 78 (78.19) | 70 (71.56) | 205 (204.02) | ||||||
| rs2887502 | 4.548 | 0.033 | 3.522 | 0.061 | 0.174 | 0.677 | |||
| CC | 0 (3.33) | 8 (4.46) | 11 (9.88) | ||||||
| CT | 46 (39.35) | 39 (45.72) | 114 (116.24) | ||||||
| TT | 113 (116.33) | 116 (112.64) | 343 (341.88) | ||||||
| rs6897932 | 0.412 | 0.521 | 0.770 | 0.380 | 4.656 | 0.031 | |||
| CC | 111 (112.09) | 111 (109.34) | 329 (335.08) | ||||||
| CT | 45 (42.82) | 45 (48.32) | 134 (121.85) | ||||||
| TT | 3 (4.09) | 7 (5.34) | 5 (11.08) | ||||||
A P < 0.05 was considered statistically significant. MS: Multiple sclerosis; NMO: Neuromyelitis optica; IL7: Interleukin-7; IL7RA: Interleukin-7 receptor alpha.
Allele and genotype distributions of IL7 and IL7R variants among MS, NMO and healthy controls, n (%)
| Variants | Genotype/allele | Controls ( | MS ( | NMOT ( | NMOP ( | Chi-square or Fisher’s exact values | ||||
|---|---|---|---|---|---|---|---|---|---|---|
| MS versus controls | Total NMO | NMO-IgG positive | ||||||||
| NMOT versus controls | MS versus NMOT | NMOP versus controls | MS versus NMOP | |||||||
| rs1520333 | GG | 130 (27.78) | 46 (28.93) | 44 (27.00) | 18 (31.58) | |||||
| GA | 219 (46.79) | 88 (55.35) | 83 (50.92) | 25 (43.86) | ||||||
| AA | 119 (25.43) | 25 (15.72) | 36 (22.09) | 14 (24.56) | ||||||
| G | 479 (51.18) | 180 (56.60) | 171 (52.45) | 61 (53.51) | ||||||
| A | 457 (48.82) | 138 (43.40) | 155 (47.55) | 53 (46.49) | ||||||
| rs6897932 | CC | 329 (70.30) | 111 (69.81) | 111 (68.10) | 35 (61.40) | |||||
| CT | 134 (28.63) | 45 (28.30) | 45 (27.61) | 18 (31.58) | ||||||
| TT | 5 (1.07) | 3 (1.89) | 7 (4.29) | 4 (7.02) | ||||||
| C | 792 (84.62) | 267 (83.96) | 267 (81.90) | 88 (77.19) | ||||||
| T | 144 (15.38) | 51 (16.04) | 59 (18.10) | 26 (22.81) | ||||||
*The results of Fisher's exact test. P < 0.05 was considered statistically significant. MS: Multiple sclerosis; NMO: Neuromyelitis optica; NMOT: Total neuromyelitis optica patients; NMOP: Neuromyelitis optica-IgG positive patients; IL7: Interleukin-7; IL7RA: Interleukin-7 receptor alpha.
Allele and genotype distributions of 5 newly studied IL7 variants among MS, NMO and healthy controls, n (%)
| Variants | Genotype/allele | Controls ( | MS ( | NMOT ( | NMOP ( | Chi-square or Fisher’s exact values | ||||
|---|---|---|---|---|---|---|---|---|---|---|
| MS versus controls | Total NMO | NMO-IgG (+) NMO | ||||||||
| NMOT versus controls | MS versus NMOT | NMOP versus controls | MS versus NMOP | |||||||
| rs1545298 | CC | 32 (6.84) | 10 (6.29) | 11 (7.51) | 2 (3.51) | |||||
| CT | 195 (41.67) | 59 (37.11) | 66 (39.31) | 26 (45.61) | ||||||
| TT | 241 (51.50) | 90 (56.60) | 86 (53.18) | 29 (50.88) | ||||||
| C | 259 (27.67) | 79 (24.84) | 88 (26.99) | 30 (26.32) | ||||||
| T | 677 (72.33) | 239 (75.16) | 238 (73.00) | 84 (73.68) | ||||||
| rs4739140 | CC | 6 (1.28) | 0 (0) | 6 (3.68) | 2 (3.51) | |||||
| CT | 99 (21.15) | 38 (23.90) | 36 (22.09) | 14 (24.56) | ||||||
| TT | 363 (77.56) | 121 (76.10) | 121 (74.23) | 41 (71.93) | ||||||
| C | 111 (11.86) | 38 (11.95) | 48 (14.72) | 18 (15.79) | ||||||
| T | 825 (88.14) | 280 (88.05) | 278 (85.28) | 96 (84.21) | ||||||
| rs6993386 | CC | 70 (14.96) | 15 (9.43) | 22 (13.50) | 5 (8.77) | |||||
| CT | 227 (48.50) | 83 (52.21) | 78 (47.85) | 25 (43.86) | ||||||
| TT | 171 (36.54) | 61 (38.36) | 63 (38.65) | 27 (47.37) | ||||||
| C | 367 (39.21) | 113 (35.53) | 122 (37.42) | 35 (30.70) | ||||||
| T | 569 (60.79) | 205 (64.47) | 204 (62.58) | 79 (69.30) | ||||||
| rs7816065 | CC | 55 (11.75) | 14 (8.81) | 17 (10.43) | 2 (3.51) | |||||
| CT | 208 (44.44) | 67 (42.14) | 76 (46.63) | 32 (56.14) | ||||||
| TT | 205 (43.80) | 78 (49.06) | 70 (42.94) | 23 (40.35) | ||||||
| C | 318 (33.97) | 95 (29.87) | 110 (33.74) | 36 (31.58) | ||||||
| T | 618 (66.03) | 223 (70.13) | 216 (66.26) | 78 (68.42) | ||||||
| rs2887502 | CC | 11 (2.35) | 0 (0) | 8 (4.91) | 2 (3.51) | |||||
| CT | 114 (24.36) | 46 (28.93) | 39 (23.93) | 15 (26.32) | ||||||
| TT | 343 (73.29) | 113 (71.07) | 116 (71.17) | 40 (70.18) | ||||||
| C | 136 (14.53) | 46 (14.47) | 55 (16.87) | 19 (16.67) | ||||||
| T | 800 (85.47) | 272 (95.53) | 271 (83.13) | 95 (83.33) | ||||||
*The results of Fisher's exact test. P < 0.05 was considered statistically significant. MS: Multiple sclerosis; NMO: Neuromyelitis optica; NMOT: Total neuromyelitis optica patients. NMOP: Neuromyelitis optica-IgG positive patients; IL7: Interleukin-7.