Literature DB >> 26608884

Systems biology approaches to study the molecular effects of caloric restriction and polyphenols on aging processes.

Sébastien Lacroix1, Mario Lauria1, Marie-Pier Scott-Boyer1, Luca Marchetti1, Corrado Priami1,2, Laura Caberlotto3.   

Abstract

Worldwide population is aging, and a large part of the growing burden associated with age-related conditions can be prevented or delayed by promoting healthy lifestyle and normalizing metabolic risk factors. However, a better understanding of the pleiotropic effects of available nutritional interventions and their influence on the multiple processes affected by aging is needed to select and implement the most promising actions. New methods of analysis are required to tackle the complexity of the interplay between nutritional interventions and aging, and to make sense of a growing amount of -omics data being produced for this purpose. In this paper, we review how various systems biology-inspired methods of analysis can be applied to the study of the molecular basis of nutritional interventions promoting healthy aging, notably caloric restriction and polyphenol supplementation. We specifically focus on the role that different versions of network analysis, molecular signature identification and multi-omics data integration are playing in elucidating the complex mechanisms underlying nutrition, and provide some examples on how to extend the application of these methods using available microarray data.

Entities:  

Keywords:  Glutamate receptors; Healthy aging; Inflammation; Multi-omics integration; Network analysis; Oxidative stress

Year:  2015        PMID: 26608884      PMCID: PMC4659783          DOI: 10.1007/s12263-015-0508-9

Source DB:  PubMed          Journal:  Genes Nutr        ISSN: 1555-8932            Impact factor:   5.523


  78 in total

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Authors:  Joseph A Baur
Journal:  Mech Ageing Dev       Date:  2010-02-26       Impact factor: 5.432

Review 2.  Resveratrol vs. calorie restriction: data from rodents to humans.

Authors:  Yan Y Lam; Courtney M Peterson; Eric Ravussin
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3.  JOINT AND INDIVIDUAL VARIATION EXPLAINED (JIVE) FOR INTEGRATED ANALYSIS OF MULTIPLE DATA TYPES.

Authors:  Eric F Lock; Katherine A Hoadley; J S Marron; Andrew B Nobel
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4.  Short-term caloric restriction, resveratrol, or combined treatment regimens initiated in late-life alter mitochondrial protein expression profiles in a fiber-type specific manner in aged animals.

Authors:  Anna-Maria Joseph; Angelina G Malamo; Jason Silvestre; Nick Wawrzyniak; Sean Carey-Love; Linda M-D Nguyen; Debapriya Dutta; Jinze Xu; Christiaan Leeuwenburgh; Peter J Adhihetty
Journal:  Exp Gerontol       Date:  2013-06-07       Impact factor: 4.032

5.  Resveratrol up-regulates AMPA receptor expression via AMP-activated protein kinase-mediated protein translation.

Authors:  Guan Wang; Stephen Amato; James Gilbert; Heng-Ye Man
Journal:  Neuropharmacology       Date:  2015-03-17       Impact factor: 5.250

6.  Integrated pathway-level analysis of transcriptomics and metabolomics data with IMPaLA.

Authors:  Atanas Kamburov; Rachel Cavill; Timothy M D Ebbels; Ralf Herwig; Hector C Keun
Journal:  Bioinformatics       Date:  2011-09-04       Impact factor: 6.937

Review 7.  Autophagy and aging.

Authors:  David C Rubinsztein; Guillermo Mariño; Guido Kroemer
Journal:  Cell       Date:  2011-09-02       Impact factor: 41.582

8.  Caloric restriction can improve learning ability in C57/BL mice via regulation of the insulin-PI3K/Akt signaling pathway.

Authors:  Lina Ma; Zhiwei Zhao; Rong Wang; Xu Zhang; Jingyan Zhang; Wen Dong; Baolei Xu; Jingshuang Zhang
Journal:  Neurol Sci       Date:  2014-03-21       Impact factor: 3.307

9.  Effects of resveratrol on memory performance, hippocampal functional connectivity, and glucose metabolism in healthy older adults.

Authors:  A Veronica Witte; Lucia Kerti; Daniel S Margulies; Agnes Flöel
Journal:  J Neurosci       Date:  2014-06-04       Impact factor: 6.167

10.  Virgin olive oil supplementation and long-term cognition: the PREDIMED-NAVARRA randomized, trial.

Authors:  E H Martínez-Lapiscina; P Clavero; E Toledo; B San Julián; A Sanchez-Tainta; D Corella; R M Lamuela-Raventós; J A Martínez; M Á Martínez-Gonzalez
Journal:  J Nutr Health Aging       Date:  2013       Impact factor: 4.075

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  6 in total

Review 1.  Systems biology approaches to understand the effects of nutrition and promote health.

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Journal:  Br J Clin Pharmacol       Date:  2016-05-29       Impact factor: 4.335

Review 2.  Evaluating the beneficial effects of dietary restrictions: A framework for precision nutrigeroscience.

Authors:  Kenneth A Wilson; Manish Chamoli; Tyler A Hilsabeck; Manish Pandey; Sakshi Bansal; Geetanjali Chawla; Pankaj Kapahi
Journal:  Cell Metab       Date:  2021-09-22       Impact factor: 31.373

Review 3.  Modeling-Enabled Systems Nutritional Immunology.

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4.  Identification of an early transcriptomic signature of insulin resistance and related diseases in lymphomonocytes of healthy subjects.

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Journal:  PLoS One       Date:  2017-08-04       Impact factor: 3.240

5.  Combined use of protein biomarkers and network analysis unveils deregulated regulatory circuits in Duchenne muscular dystrophy.

Authors:  Silvia Parolo; Luca Marchetti; Mario Lauria; Karla Misselbeck; Marie-Pier Scott-Boyer; Laura Caberlotto; Corrado Priami
Journal:  PLoS One       Date:  2018-03-12       Impact factor: 3.240

Review 6.  Protein Restriction, Epigenetic Diet, Intermittent Fasting as New Approaches for Preventing Age-associated Diseases.

Authors:  Nazanin Asghari Hanjani; Mohammadreza Vafa
Journal:  Int J Prev Med       Date:  2018-06-29
  6 in total

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