Literature DB >> 26607710

PRIdictor: Protein-RNA Interaction predictor.

Narankhuu Tuvshinjargal1, Wook Lee1, Byungkyu Park1, Kyungsook Han2.   

Abstract

Several computational methods have been developed to predict RNA-binding sites in protein, but its inverse problem (i.e., predicting protein-binding sites in RNA) has received much less attention. Furthermore, most methods that predict RNA-binding sites in protein do not consider interaction partners of a protein. This paper presents a web server called PRIdictor (Protein-RNA Interaction predictor) which predicts mutual binding sites in RNA and protein at the nucleotide- and residue-level resolutions from their sequences. PRIdictor can be used as a web-based application or web service at http://bclab.inha.ac.kr/pridictor.
Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

Keywords:  Prediction; Protein-binding ribonucleotide; RNA-binding amino acid; Support vector machine; Web server

Mesh:

Substances:

Year:  2015        PMID: 26607710     DOI: 10.1016/j.biosystems.2015.10.004

Source DB:  PubMed          Journal:  Biosystems        ISSN: 0303-2647            Impact factor:   1.973


  23 in total

1.  Methods for Molecular Modelling of Protein Complexes.

Authors:  Tejashree Rajaram Kanitkar; Neeladri Sen; Sanjana Nair; Neelesh Soni; Kaustubh Amritkar; Yogendra Ramtirtha; M S Madhusudhan
Journal:  Methods Mol Biol       Date:  2021

2.  A comparative analysis of machine learning classifiers for predicting protein-binding nucleotides in RNA sequences.

Authors:  Ankita Agarwal; Kunal Singh; Shri Kant; Ranjit Prasad Bahadur
Journal:  Comput Struct Biotechnol J       Date:  2022-06-17       Impact factor: 6.155

3.  Degradation of MicroRNA miR-466d-3p by Japanese Encephalitis Virus NS3 Facilitates Viral Replication and Interleukin-1β Expression.

Authors:  Hui Jiang; Lige Bai; Lina Ji; Zhuofang Bai; Jianwei Su; Tian Qin; Guojun Wang; Vinod Balasubramaniam; Xiao Wang; Min Cui; Jing Ye; Shengbo Cao; Guangpeng Li; Yang Yang
Journal:  J Virol       Date:  2020-07-16       Impact factor: 5.103

4.  ViRBase v3.0: a virus and host ncRNA-associated interaction repository with increased coverage and annotation.

Authors:  Jun Cheng; Yunqing Lin; Linfu Xu; Kechen Chen; Qi Li; Kaixin Xu; Lin Ning; Juanjuan Kang; Tianyu Cui; Yan Huang; Xiaoyang Zhao; Dong Wang; Yanhui Li; Xi Su; Bin Yang
Journal:  Nucleic Acids Res       Date:  2022-01-07       Impact factor: 16.971

5.  RPI-Bind: a structure-based method for accurate identification of RNA-protein binding sites.

Authors:  Jiesi Luo; Liang Liu; Suresh Venkateswaran; Qianqian Song; Xiaobo Zhou
Journal:  Sci Rep       Date:  2017-04-04       Impact factor: 4.379

6.  Predicting protein-binding regions in RNA using nucleotide profiles and compositions.

Authors:  Daesik Choi; Byungkyu Park; Hanju Chae; Wook Lee; Kyungsook Han
Journal:  BMC Syst Biol       Date:  2017-03-14

7.  Data of protein-RNA binding sites.

Authors:  Wook Lee; Byungkyu Park; Daesik Choi; Kyungsook Han
Journal:  Data Brief       Date:  2016-12-29

Review 8.  A Brief Review of RNA-Protein Interaction Database Resources.

Authors:  Ying Yi; Yue Zhao; Yan Huang; Dong Wang
Journal:  Noncoding RNA       Date:  2017-01-27

9.  lncRNA lnc-POP1-1 upregulated by VN1R5 promotes cisplatin resistance in head and neck squamous cell carcinoma through interaction with MCM5.

Authors:  Yingying Jiang; Haiyan Guo; Tong Tong; Fei Xie; Xing Qin; Xiaoning Wang; Wantao Chen; Jianjun Zhang
Journal:  Mol Ther       Date:  2021-06-08       Impact factor: 11.454

10.  ccPDB 2.0: an updated version of datasets created and compiled from Protein Data Bank.

Authors:  Piyush Agrawal; Sumeet Patiyal; Rajesh Kumar; Vinod Kumar; Harinder Singh; Pawan Kumar Raghav; Gajendra P S Raghava
Journal:  Database (Oxford)       Date:  2019-01-01       Impact factor: 3.451

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.