Literature DB >> 26605853

Long-Time Dynamics through Parallel Trajectory Splicing.

Danny Perez1, Ekin D Cubuk2, Amos Waterland2, Efthimios Kaxiras2, Arthur F Voter1.   

Abstract

Simulating the atomistic evolution of materials over long time scales is a longstanding challenge, especially for complex systems where the distribution of barrier heights is very heterogeneous. Such systems are difficult to investigate using conventional long-time scale techniques, and the fact that they tend to remain trapped in small regions of configuration space for extended periods of time strongly limits the physical insights gained from short simulations. We introduce a novel simulation technique, Parallel Trajectory Splicing (ParSplice), that aims at addressing this problem through the timewise parallelization of long trajectories. The computational efficiency of ParSplice stems from a speculation strategy whereby predictions of the future evolution of the system are leveraged to increase the amount of work that can be concurrently performed at any one time, hence improving the scalability of the method. ParSplice is also able to accurately account for, and potentially reuse, a substantial fraction of the computational work invested in the simulation. We validate the method on a simple Ag surface system and demonstrate substantial increases in efficiency compared to previous methods. We then demonstrate the power of ParSplice through the study of topology changes in Ag42Cu13 core-shell nanoparticles.

Year:  2015        PMID: 26605853     DOI: 10.1021/acs.jctc.5b00916

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  4 in total

1.  Evidence for percolation diffusion of cations and reordering in disordered pyrochlore from accelerated molecular dynamics.

Authors:  Romain Perriot; Blas P Uberuaga; Richard J Zamora; Danny Perez; Arthur F Voter
Journal:  Nat Commun       Date:  2017-09-20       Impact factor: 14.919

2.  The mobility of small vacancy/helium complexes in tungsten and its impact on retention in fusion-relevant conditions.

Authors:  Danny Perez; Luis Sandoval; Sophie Blondel; Brian D Wirth; Blas P Uberuaga; Arthur F Voter
Journal:  Sci Rep       Date:  2017-05-30       Impact factor: 4.379

Review 3.  Toward Bottom-Up Understanding of Transport in Concentrated Battery Electrolytes.

Authors:  Aashutosh Mistry; Zhou Yu; Brandon L Peters; Chao Fang; Rui Wang; Larry A Curtiss; Nitash P Balsara; Lei Cheng; Venkat Srinivasan
Journal:  ACS Cent Sci       Date:  2022-06-28       Impact factor: 18.728

4.  Exascale applications: skin in the game.

Authors:  Francis Alexander; Ann Almgren; John Bell; Amitava Bhattacharjee; Jacqueline Chen; Phil Colella; David Daniel; Jack DeSlippe; Lori Diachin; Erik Draeger; Anshu Dubey; Thom Dunning; Thomas Evans; Ian Foster; Marianne Francois; Tim Germann; Mark Gordon; Salman Habib; Mahantesh Halappanavar; Steven Hamilton; William Hart; Zhenyu Henry Huang; Aimee Hungerford; Daniel Kasen; Paul R C Kent; Tzanio Kolev; Douglas B Kothe; Andreas Kronfeld; Ye Luo; Paul Mackenzie; David McCallen; Bronson Messer; Sue Mniszewski; Chris Oehmen; Amedeo Perazzo; Danny Perez; David Richards; William J Rider; Rob Rieben; Kenneth Roche; Andrew Siegel; Michael Sprague; Carl Steefel; Rick Stevens; Madhava Syamlal; Mark Taylor; John Turner; Jean-Luc Vay; Artur F Voter; Theresa L Windus; Katherine Yelick
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2020-01-20       Impact factor: 4.226

  4 in total

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