Literature DB >> 26605570

Bridging Static and Dynamical Descriptions of Chemical Reactions: An ab Initio Study of CO2 Interacting with Water Molecules.

Grégoire A Gallet1, Fabio Pietrucci1, Wanda Andreoni1,2.   

Abstract

Extracting reliable thermochemical parameters from molecular dynamics simulations of chemical reactions, although based on ab initio methods, is generally hampered by difficulties in reproducing the results and controlling the statistical errors. This is a serious drawback with respect to the quantum-chemical description based on potential energy surfaces. This work is an attempt to fill this gap. We apply molecular dynamics, based on density functional theory (DFT) and empowered by path metadynamics (MTD), to simulate the reaction of CO2 with (one, two, and three) water molecules in the gas phase. This study relies on a strategy that ensures a precise control of the accuracy of the reaction coordinates and of the reconstructed free-energy surface on this space, namely, on (i) fully reversible MTD simulations, (ii) a committor probability analysis for the diagnosis of the collective variables, and (iii) a cluster analysis for the characterization of the reconstructed free-energy surfaces. This robust procedure permits a meaningful comparison with more traditional calculations of the potential energy surfaces that we also perform within the same DFT computational scheme. This comparison shows in particular that the reactants and products of systems with only three water molecules can no longer be understood in terms of one structure but must be described as statistical configuration ensembles. Calculations carried out with different prescriptions for the exchange-correlation functionals also allow us to establish their quantitative effect on the activation barriers for the formation and the dissociation of carbonic acid. Their decrease induced by the addition of one water molecule (catalytic effect) is found to be largely independent of the specific functional.

Entities:  

Year:  2012        PMID: 26605570     DOI: 10.1021/ct300581n

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  5 in total

1.  Reply to Bada and Cleaves: Ab initio free-energy landscape of Miller-like prebiotic reactions.

Authors:  Antonino Marco Saitta; Franz Saija; Fabio Pietrucci; François Guyot
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-08       Impact factor: 11.205

2.  Miller experiments in atomistic computer simulations.

Authors:  Antonino Marco Saitta; Franz Saija
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-08       Impact factor: 11.205

3.  Formamide reaction network in gas phase and solution via a unified theoretical approach: Toward a reconciliation of different prebiotic scenarios.

Authors:  Fabio Pietrucci; Antonino Marco Saitta
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-23       Impact factor: 11.205

4.  Characterization of a trans-trans Carbonic Acid-Fluoride Complex by Infrared Action Spectroscopy in Helium Nanodroplets.

Authors:  Daniel A Thomas; Eike Mucha; Maike Lettow; Gerard Meijer; Mariana Rossi; Gert von Helden
Journal:  J Am Chem Soc       Date:  2019-03-27       Impact factor: 15.419

5.  Confinement effects and acid strength in zeolites.

Authors:  Emanuele Grifoni; GiovanniMaria Piccini; Johannes A Lercher; Vassiliki-Alexandra Glezakou; Roger Rousseau; Michele Parrinello
Journal:  Nat Commun       Date:  2021-05-11       Impact factor: 14.919

  5 in total

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