Literature DB >> 26602739

Establishing a community-wide DNA barcode library as a new tool for arctic research.

H Wirta1, G Várkonyi2, C Rasmussen3, R Kaartinen4, N M Schmidt5, P D N Hebert6, M Barták7, G Blagoev6, H Disney8, S Ertl9, P Gjelstrup10, D J Gwiazdowicz11, L Huldén12, J Ilmonen13, J Jakovlev14, M Jaschhof15, J Kahanpää12, T Kankaanpää1, P H Krogh10, R Labbee6, C Lettner9, V Michelsen16, S A Nielsen17, T R Nielsen18, L Paasivirta19, S Pedersen6, J Pohjoismäki20, J Salmela21, P Vilkamaa12, H Väre22, M von Tschirnhaus23, T Roslin1,4.   

Abstract

DNA sequences offer powerful tools for describing the members and interactions of natural communities. In this study, we establish the to-date most comprehensive library of DNA barcodes for a terrestrial site, including all known macroscopic animals and vascular plants of an intensively studied area of the High Arctic, the Zackenberg Valley in Northeast Greenland. To demonstrate its utility, we apply the library to identify nearly 20 000 arthropod individuals from two Malaise traps, each operated for two summers. Drawing on this material, we estimate the coverage of previous morphology-based species inventories, derive a snapshot of faunal turnover in space and time and describe the abundance and phenology of species in the rapidly changing arctic environment. Overall, 403 terrestrial animal and 160 vascular plant species were recorded by morphology-based techniques. DNA barcodes (CO1) offered high resolution in discriminating among the local animal taxa, with 92% of morphologically distinguishable taxa assigned to unique Barcode Index Numbers (BINs) and 93% to monophyletic clusters. For vascular plants, resolution was lower, with 54% of species forming monophyletic clusters based on barcode regions rbcLa and ITS2. Malaise catches revealed 122 BINs not detected by previous sampling and DNA barcoding. The insect community was dominated by a few highly abundant taxa. Even closely related taxa differed in phenology, emphasizing the need for species-level resolution when describing ongoing shifts in arctic communities and ecosystems. The DNA barcode library now established for Zackenberg offers new scope for such explorations, and for the detailed dissection of interspecific interactions throughout the community.
© 2015 John Wiley & Sons Ltd.

Entities:  

Keywords:  DNA barcode library; Greenland; arthropod; high arctic; species diversity

Mesh:

Substances:

Year:  2015        PMID: 26602739     DOI: 10.1111/1755-0998.12489

Source DB:  PubMed          Journal:  Mol Ecol Resour        ISSN: 1755-098X            Impact factor:   7.090


  22 in total

1.  One fly to rule them all-muscid flies are the key pollinators in the Arctic.

Authors:  Mikko Tiusanen; Paul D N Hebert; Niels Martin Schmidt; Tomas Roslin
Journal:  Proc Biol Sci       Date:  2016-09-28       Impact factor: 5.349

2.  Limited dietary overlap amongst resident Arctic herbivores in winter: complementary insights from complementary methods.

Authors:  Niels M Schmidt; Jesper B Mosbacher; Eero J Vesterinen; Tomas Roslin; Anders Michelsen
Journal:  Oecologia       Date:  2018-04-26       Impact factor: 3.225

Review 3.  The Chironomidae (Diptera) of Svalbard and Jan Mayen.

Authors:  Elisabeth Stur; Torbjørn Ekrem
Journal:  Insects       Date:  2020-03-13       Impact factor: 2.769

4.  High resistance towards herbivore-induced habitat change in a high Arctic arthropod community.

Authors:  Niels M Schmidt; Jesper B Mosbacher; Bernhard Eitzinger; Eero J Vesterinen; Tomas Roslin
Journal:  Biol Lett       Date:  2018-05       Impact factor: 3.703

5.  DNA Barcodes for the Northern European Tachinid Flies (Diptera: Tachinidae).

Authors:  Jaakko L O Pohjoismäki; Jere Kahanpää; Marko Mutanen
Journal:  PLoS One       Date:  2016-11-04       Impact factor: 3.240

6.  Efficient Identification of the Forest Tree Species in Aceraceae Using DNA Barcodes.

Authors:  Yu-Wei Han; Dong Duan; Xiong-Feng Ma; Yun Jia; Zhan-Lin Liu; Gui-Fang Zhao; Zhong-Hu Li
Journal:  Front Plant Sci       Date:  2016-11-16       Impact factor: 5.753

7.  Interaction webs in arctic ecosystems: Determinants of arctic change?

Authors:  Niels M Schmidt; Bess Hardwick; Olivier Gilg; Toke T Høye; Paul Henning Krogh; Hans Meltofte; Anders Michelsen; Jesper B Mosbacher; Katrine Raundrup; Jeroen Reneerkens; Lærke Stewart; Helena Wirta; Tomas Roslin
Journal:  Ambio       Date:  2017-02       Impact factor: 5.129

8.  Mapping global biodiversity connections with DNA barcodes: Lepidoptera of Pakistan.

Authors:  Muhammad Ashfaq; Saleem Akhtar; Muhammad Athar Rafi; Shahid Mansoor; Paul D N Hebert
Journal:  PLoS One       Date:  2017-03-24       Impact factor: 3.240

9.  Testing the Global Malaise Trap Program - How well does the current barcode reference library identify flying insects in Germany?

Authors:  Matthias F Geiger; Jerome Moriniere; Axel Hausmann; Gerhard Haszprunar; Wolfgang Wägele; Paul D N Hebert; Björn Rulik
Journal:  Biodivers Data J       Date:  2016-12-01

10.  Two new species of Tipula (Vestiplex) from Southern China based on morphological and molecular data, with redescription of Tipula (Vestiplex) bicalcarata (Diptera, Tipulidae, Tipulinae).

Authors:  Qiu-Lei Men; Chen W Young; Pavel Starkevich; Yong-Fu Yu; Xiao-Ping Lei
Journal:  Zookeys       Date:  2017-02-23       Impact factor: 1.546

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