Literature DB >> 26600678

Morphological and genetic diversity assessment of sesame (Sesamum indicum L.) accessions differing in origin.

Sarita K Pandey1, Arna Das2, Pooja Rai2, Tapash Dasgupta2.   

Abstract

Sesame is an important ancient oilseed crop of high medicinal value. In the present study, 37 characters including both quantitative and qualitative traits of sixty genotypes were characterized following IPGRI morphological descriptors for sesame. Multivariate analysis was computed to distinguish the varieties into different groups. Though thirty six microsatellite markers including genomic and Est-SSR markers were initially selected, but, finally, the accessions were genotyped by eight polymorphic primers. Altogether, 27 alleles were detected among the 60 genotypes, with an average of 3.37 alleles per locus. The number of alleles ranged from 2 to 6 alleles. From data of microsatellite markers, dissimilarity coefficients between varieties were computed following Jaccard's coefficient method. Principal co-ordinate analysis was used to represent the varieties in bi-directional space. Dendrogram was constructed using NJ method based on dissimilarity matrix. Cluster analysis based on morphological and molecular marker classified sesame genotypes into two major groups. Mantel test showed an insignificant correlation between phenotypic and molecular marker information. The genotypes belonging to the same geographical area did not always occupy the same cluster. The results confirmed that both genetic and phenotypic diversity in a combined way could efficiently evaluate the variation present in different sesame accessions in any breeding program.

Entities:  

Keywords:  Clustering; EST-SSR; Genetic diversity; Phenotypic; SSR; Sesame

Year:  2015        PMID: 26600678      PMCID: PMC4646868          DOI: 10.1007/s12298-015-0322-2

Source DB:  PubMed          Journal:  Physiol Mol Biol Plants        ISSN: 0974-0430


  9 in total

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Review 3.  Crop genomics: advances and applications.

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Journal:  Nat Rev Genet       Date:  2011-12-29       Impact factor: 53.242

4.  Ribosomal DNA spacer-length polymorphisms in barley: mendelian inheritance, chromosomal location, and population dynamics.

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5.  The detection of disease clustering and a generalized regression approach.

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Journal:  Cancer Res       Date:  1967-02       Impact factor: 12.701

6.  Development and validation of genic-SSR markers in sesame by RNA-seq.

Authors:  Haiyang Zhang; Libin Wei; Hongmei Miao; Tide Zhang; Cuiying Wang
Journal:  BMC Genomics       Date:  2012-07-16       Impact factor: 3.969

7.  Genetic relationship and diversity in a sesame (Sesamum indicum L.) germplasm collection using amplified fragment length polymorphism (AFLP).

Authors:  Hernán E Laurentin; Petr Karlovsky
Journal:  BMC Genet       Date:  2006-02-16       Impact factor: 2.797

8.  Genetic analysis and molecular characterization of Chinese sesame (Sesamum indicum L.) cultivars using insertion-deletion (InDel) and simple sequence repeat (SSR) markers.

Authors:  Kun Wu; Minmin Yang; Hongyan Liu; Ye Tao; Ju Mei; Yingzhong Zhao
Journal:  BMC Genet       Date:  2014-03-19       Impact factor: 2.797

9.  High-density genetic map construction and QTLs analysis of grain yield-related traits in sesame (Sesamum indicum L.) based on RAD-Seq techonology.

Authors:  Kun Wu; Hongyan Liu; Minmin Yang; Ye Tao; Huihui Ma; Wenxiong Wu; Yang Zuo; Yingzhong Zhao
Journal:  BMC Plant Biol       Date:  2014-10-10       Impact factor: 4.215

  9 in total
  11 in total

1.  Assessment of genetic diversity of sesame accessions collected from different ecological regions using sequence-related amplified polymorphism markers.

Authors:  Bazel H Ali Al-Somain; Hussein M Migdadi; Sulieman A Al-Faifi; Salem S Alghamdi; Abdulmalek A Muharram; Nabil A Mohammed; Yahya A Refay
Journal:  3 Biotech       Date:  2017-05-12       Impact factor: 2.406

Review 2.  The Emerging Oilseed Crop Sesamum indicum Enters the "Omics" Era.

Authors:  Komivi Dossa; Diaga Diouf; Linhai Wang; Xin Wei; Yanxin Zhang; Mareme Niang; Daniel Fonceka; Jingyin Yu; Marie A Mmadi; Louis W Yehouessi; Boshou Liao; Xiurong Zhang; Ndiaga Cisse
Journal:  Front Plant Sci       Date:  2017-06-30       Impact factor: 5.753

3.  Genetic variation among Saudi tomato (Solanum lycopersicum L.) landraces studied using SDS-PAGE and SRAP markers.

Authors:  Najla Al Shaye; Hussein Migdadi; Asma Charbaji; Shatha Alsayegh; Shaza Daoud; Wala Al-Anazi; Salem Alghamdi
Journal:  Saudi J Biol Sci       Date:  2018-04-21       Impact factor: 4.219

4.  Transcriptome Dynamics during Black and White Sesame (Sesamum indicum L.) Seed Development and Identification of Candidate Genes Associated with Black Pigmentation.

Authors:  Linhai Wang; Senouwa Segla Koffi Dossou; Xin Wei; Yanxin Zhang; Donghua Li; Jingyin Yu; Xiurong Zhang
Journal:  Genes (Basel)       Date:  2020-11-25       Impact factor: 4.096

5.  Comparative metabolomics analysis of different sesame (Sesamum indicum L.) tissues reveals a tissue-specific accumulation of metabolites.

Authors:  Senouwa Segla Koffi Dossou; Fangtao Xu; Xianghua Cui; Chen Sheng; Rong Zhou; Jun You; Koffi Tozo; Linhai Wang
Journal:  BMC Plant Biol       Date:  2021-07-24       Impact factor: 4.215

6.  DIVIS: a semantic DIstance to improve the VISualisation of heterogeneous phenotypic datasets.

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Journal:  BioData Min       Date:  2022-04-04       Impact factor: 2.522

Review 7.  Genome-wide association study and its applications in the non-model crop Sesamum indicum.

Authors:  Muez Berhe; Komivi Dossa; Jun You; Pape Adama Mboup; Idrissa Navel Diallo; Diaga Diouf; Xiurong Zhang; Linhai Wang
Journal:  BMC Plant Biol       Date:  2021-06-22       Impact factor: 4.215

8.  Genetic Architecture Underpinning Yield Components and Seed Mineral-Nutrients in Sesame.

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Journal:  Genes (Basel)       Date:  2020-10-18       Impact factor: 4.096

9.  Characterization of the Genetic Diversity Present in a Diverse Sesame Landrace Collection Based on Phenotypic Traits and EST-SSR Markers Coupled With an HRM Analysis.

Authors:  Evangelia Stavridou; Georgios Lagiotis; Parthena Kalaitzidou; Ioannis Grigoriadis; Irini Bosmali; Eleni Tsaliki; Stiliani Tsiotsiou; Apostolos Kalivas; Ioannis Ganopoulos; Panagiotis Madesis
Journal:  Plants (Basel)       Date:  2021-03-30

10.  Identifying Traits Associated With Terminal Drought Tolerance in Sesame (Sesamum indicum L.) Genotypes.

Authors:  Brij Bihari Pandey; P Ratnakumar; B Usha Kiran; Mangesh Y Dudhe; G Sowjanya Lakshmi; Kulasekaran Ramesh; Arti Guhey
Journal:  Front Plant Sci       Date:  2021-12-10       Impact factor: 5.753

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