Literature DB >> 26599585

Reactivity of Dimeric Tetrazirconium(IV) Wells-Dawson Polyoxometalate toward Dipeptide Hydrolysis Studied by a Combined Experimental and Density Functional Theory Approach.

Hong Giang T Ly1, Tzvetan Mihaylov1, Gregory Absillis1, Kristine Pierloot1, Tatjana N Parac-Vogt1.   

Abstract

Detailed kinetic studies on the hydrolysis of glycylglycine (Gly-Gly) in the presence of the dimeric tetrazirconium(IV)-substituted Wells-Dawson-type polyoxometalate Na14[Zr4(P2W16O59)2(μ3-O)2(OH)2(H2O)4] · 57H2O (1) were performed by a combination of (1)H, (13)C, and (31)P NMR spectroscopies. The catalyst was shown to be stable under a broad range of reaction conditions. The effect of pD on the hydrolysis of Gly-Gly showed a bell-shaped profile with the fastest hydrolysis observed at pD 7.4. The observed rate constant for the hydrolysis of Gly-Gly at pD 7.4 and 60 °C was 4.67 × 10(-7) s(-1), representing a significant acceleration as compared to the uncatalyzed reaction. (13)C NMR data were indicative for coordination of Gly-Gly to 1 via its amide oxygen and amine nitrogen atoms, resulting in a hydrolytically active complex. Importantly, the effective hydrolysis of a series of Gly-X dipeptides with different X side chain amino acids in the presence of 1 was achieved, and the observed rate constant was shown to be dependent on the volume, chemical nature, and charge of the X amino acid side chain. To give a mechanistic explanation of the observed catalytic hydrolysis of Gly-Gly, a detailed quantum-chemical study was performed. The theoretical results confirmed the nature of the experimentally suggested binding mode in the hydrolytically active complex formed between Gly-Gly and 1. To elucidate the role of 1 in the hydrolytic process, both the uncatalyzed and the polyoxometalate-catalyzed reactions were examined. In the rate-determining step of the uncatalyzed Gly-Gly hydrolysis, a carboxylic oxygen atom abstracts a proton from a solvent water molecule and the nascent OH nucleophile attacks the peptide carbon atom. Analogous general-base activity of the free carboxylic group was found to take place also in the case of polyoxometalate-catalyzed hydrolysis as the main catalytic effect originates from the -C═O···Zr(IV) binding.

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Year:  2015        PMID: 26599585     DOI: 10.1021/acs.inorgchem.5b02122

Source DB:  PubMed          Journal:  Inorg Chem        ISSN: 0020-1669            Impact factor:   5.165


  3 in total

Review 1.  Computational Modelling of the Interactions Between Polyoxometalates and Biological Systems.

Authors:  Adrià Gil; Jorge J Carbó
Journal:  Front Chem       Date:  2022-04-14       Impact factor: 5.545

2.  Interplay between structural parameters and reactivity of Zr6-based MOFs as artificial proteases.

Authors:  Alexandra Loosen; Francisco de Azambuja; Simon Smolders; Jens Moons; Charlotte Simms; Dirk De Vos; Tatjana N Parac-Vogt
Journal:  Chem Sci       Date:  2020-05-22       Impact factor: 9.825

3.  A zirconium metal-organic framework with SOC topological net for catalytic peptide bond hydrolysis.

Authors:  Sujing Wang; Hong Giang T Ly; Mohammad Wahiduzzaman; Charlotte Simms; Iurii Dovgaliuk; Antoine Tissot; Guillaume Maurin; Tatjana N Parac-Vogt; Christian Serre
Journal:  Nat Commun       Date:  2022-03-11       Impact factor: 14.919

  3 in total

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