Literature DB >> 26598600

Going clean: structure and dynamics of peptides in the gas phase and paths to solvation.

Carsten Baldauf1, Mariana Rossi.   

Abstract

The gas phase is an artificial environment for biomolecules that has gained much attention both experimentally and theoretically due to its unique characteristic of providing a clean room environment for the comparison between theory and experiment. In this review we give an overview mainly on first-principles simulations of isolated peptides and the initial steps of their interactions with ions and solvent molecules: a bottom up approach to the complexity of biological environments. We focus on the accuracy of different methods to explore the conformational space, the connections between theory and experiment regarding collision cross section evaluations and (anharmonic) vibrational spectra, and the challenges faced in this field.

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Year:  2015        PMID: 26598600     DOI: 10.1088/0953-8984/27/49/493002

Source DB:  PubMed          Journal:  J Phys Condens Matter        ISSN: 0953-8984            Impact factor:   2.333


  5 in total

1.  Trends for isolated amino acids and dipeptides: Conformation, divalent ion binding, and remarkable similarity of binding to calcium and lead.

Authors:  M Ropo; V Blum; C Baldauf
Journal:  Sci Rep       Date:  2016-11-03       Impact factor: 4.379

2.  Mapping and classifying molecules from a high-throughput structural database.

Authors:  Sandip De; Felix Musil; Teresa Ingram; Carsten Baldauf; Michele Ceriotti
Journal:  J Cheminform       Date:  2017-02-02       Impact factor: 5.514

Review 3.  Gas-Phase Infrared Spectroscopy of Neutral Peptides: Insights from the Far-IR and THz Domain.

Authors:  Sjors Bakels; Marie-Pierre Gaigeot; Anouk M Rijs
Journal:  Chem Rev       Date:  2020-02-19       Impact factor: 60.622

4.  Quantum mechanics of proteins in explicit water: The role of plasmon-like solute-solvent interactions.

Authors:  Martin Stöhr; Alexandre Tkatchenko
Journal:  Sci Adv       Date:  2019-12-13       Impact factor: 14.136

5.  Tailored photocleavable peptides: fragmentation and neutralization pathways in high vacuum.

Authors:  M Debiossac; J Schätti; M Kriegleder; P Geyer; A Shayeghi; M Mayor; M Arndt; V Köhler
Journal:  Phys Chem Chem Phys       Date:  2018-04-25       Impact factor: 3.676

  5 in total

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