Literature DB >> 26596623

Reclassification of Desulfurococcus mobilis as a synonym of Desulfurococcus mucosus, Desulfurococcus fermentans and Desulfurococcus kamchatkensis as synonyms of Desulfurococcus amylolyticus, and emendation of the D. mucosus and D. amylolyticus species descriptions.

Anna A Perevalova1, Ilya V Kublanov1, Salima Kh Bidzhieva1, Biswarup Mukhopadhyay2,3,4, Elizaveta A Bonch-Osmolovskaya1, Alexander V Lebedinsky1.   

Abstract

Representatives of the crenarchaeal genus Desulfurococcus are strictly anaerobic hyperthermophiles with an organotrophic type of metabolism. Since 1982, five Desulfurococcus species names have been validly published: Desulfurococcus mucosus, D. mobilis, D. amylolyticus, D. fermentans and D. kamchatkensis. Recently, the genomic sequences of all five species became available, promoting the refinement of their taxonomic status. Analysis of full-length high-quality 16S rRNA gene sequences shows that the sequences of D. mobilis and D. mucosus are 100 % identical and differ by 2.2 % from those of D. amylolyticus, D. fermentans and D. kamchatkensis. The latter three sequences differ from each other by 0.1-0.3 % (99.9 % similarity in the D amylolyticus-D. kamchatkensis pair and 99.7 % in the pairs involving D. fermentans). In silico prediction of DNA-DNA hybridization (DDH) values by comparison of genomes using ggdc 2.0 blast+ at http://ggdc.dsmz.de/ produced results that correlated with the 16S rRNA gene sequence similarity values. In the D. mucosus-D. mobilis and D. amylolyticus-D. kamchatkensis pairs, the predicted DDH values were 99 and 92 %, respectively, much higher than the recommended 70 % species-delimiting DDH value. Between members of different pairs, these values were no higher than 20 %. For D. fermentans, its predicted DDH values were around 70 % with D. amylolyticus and D. kamchatkensis and no higher than 20 % with D. mobilis and D. mucosus. These results indicated that D. mobilis should be reclassified as a synonym of D. mucosus, whereas D. kamchatkensis and D. fermentans should be reclassified as synonyms of D. amylolyticus.

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Year:  2015        PMID: 26596623     DOI: 10.1099/ijsem.0.000747

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  5 in total

1.  Tepidibaculum saccharolyticum gen. nov., sp. nov. a moderately thermophilic, anaerobic, spore-forming bacterium isolated from a terrestrial hot spring.

Authors:  G B Slobodkina; R V Baslerov; N K Kostryukova; E A Bonch-Osmolovskaya; A I Slobodkin
Journal:  Extremophiles       Date:  2018-06-18       Impact factor: 2.395

2.  Permanent Draft Genome Sequence of Desulfurococcus amylolyticus Strain Z-533T, a Peptide and Starch Degrader Isolated from Thermal Springs in the Kamchatka Peninsula and Kunashir Island, Russia.

Authors:  Dwi Susanti; Eric F Johnson; Alla Lapidus; James Han; T B K Reddy; Supratim Mukherjee; Manoj Pillay; Anna A Perevalova; Natalia N Ivanova; Tanja Woyke; Nikos C Kyrpides; Biswarup Mukhopadhyay
Journal:  Genome Announc       Date:  2017-04-13

3.  Metabolic reconstruction and experimental verification of glucose utilization in Desulfurococcus amylolyticus DSM 16532.

Authors:  Barbara Reischl; İpek Ergal; Simon K-M R Rittmann
Journal:  Folia Microbiol (Praha)       Date:  2018-05-24       Impact factor: 2.099

4.  Identification and Enzymatic Analysis of an Archaeal ATP-Dependent Serine Kinase from the Hyperthermophilic Archaeon Staphylothermus marinus.

Authors:  Yasunobu Mori; Hiroki Kawamura; Takaaki Sato; Takayuki Fujita; Ryuhei Nagata; Masahiro Fujihashi; Kunio Miki; Haruyuki Atomi
Journal:  J Bacteriol       Date:  2021-07-22       Impact factor: 3.490

5.  Formate Utilization by the Crenarchaeon Desulfurococcus amylolyticus.

Authors:  Ipek Ergal; Barbara Reischl; Benedikt Hasibar; Lokeshwaran Manoharan; Aaron Zipperle; Günther Bochmann; Werner Fuchs; Simon K-M R Rittmann
Journal:  Microorganisms       Date:  2020-03-23
  5 in total

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